Bra003924 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra003924 T001005_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF021
M06593_2.00 		Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND		 Dap-seq
OMalley et al.(2016)
AT1G71450_col_a 		0.798 0.960
ERF021
M06594_2.00 		Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN		 Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a 		0.798 0.960
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra003924.1-P AP2 22 73

Links

Other AP2 family TFs
Other Brassica rapa TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29900.m001628 Ricinus communis 29900.m001628 I
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I
Aquca_039_00151 Aquilegia coerulea Aquca_039_00151 N
ASIL2 Arabidopsis thaliana AT3G14180 D
AT3G11100 Arabidopsis thaliana AT3G11100 I
BGIOSGA020349 Oryza indica BGIOSGA020349 I
BGIOSGA020351 Oryza indica BGIOSGA020351 I
Bo5g136850 Brassica oleracea Bo5g136850 I
Bo9g177060 Brassica oleracea Bo9g177060 I
Bostr.13129s0416 Boechera stricta Bostr.13129s0416 I
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I
Bra009119 Brassica rapa Bra009119 I
Bra034165 Brassica rapa Bra034165 I
Bra034866 Brassica rapa Bra034866 I
Cagra.1504s0056 Capsella grandiflora Cagra.1504s0056 I
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I
Carubv10001830m.g Capsella rubella Carubv10001830m.g I
Carubv10014421m.g Capsella rubella Carubv10014421m.g I
Carubv10015321m.g Capsella rubella Carubv10015321m.g I
cassava21220.m1 Manihot esculenta cassava21220.m1 I
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I
cassava34877.m1 Manihot esculenta cassava34877.m1 I
Ca_00394 Cicer arietinum Ca_00394 I
Ca_02494 Cicer arietinum Ca_02494 N
Ca_19877 Cicer arietinum Ca_19877 I
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I
Cla015773 Citrullus lanatus Cla015773 I
Cucsa.359990 Cucumis sativus Cucsa.359990 I
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I
GLYMA07G04790 Glycine max GLYMA07G04790 I
GLYMA13G30280 Glycine max GLYMA13G30280 I
GLYMA15G08890 Glycine max GLYMA15G08890 I
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I
GRMZM2G157219 Zea mays GRMZM2G157219 I
GRMZM2G392168 Zea mays GRMZM2G392168 N
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I
Lus10020652.g Linum usitatissimum Lus10020652.g I
MDP0000097759 Malus domestica MDP0000097759 N
MDP0000255104 Malus domestica MDP0000255104 I
MDP0000281471 Malus domestica MDP0000281471 I
MDP0000943251 Malus domestica MDP0000943251 N
mgf000047m Mimulus guttatus mgf000047m I
mgf001239m Mimulus guttatus mgf001239m N
mgf006505m Mimulus guttatus mgf006505m I
MTR_4g079960 Medicago truncatula MTR_4g079960 I
MTR_8g022290 Medicago truncatula MTR_8g022290 I
OBART05G25610 Oryza barthii OBART05G25610 I
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I
OMERI02G35600 Oryza meridionalis OMERI02G35600 I
ONIVA05G26860 Oryza nivara ONIVA05G26860 I
OPUNC05G23220 Oryza punctata OPUNC05G23220 I
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I
OS05G0560600 Oryza sativa OS05G0560600 I
Pavir.J11649 Panicum virgatum Pavir.J11649 I
Pavir.J33948 Panicum virgatum Pavir.J33948 I
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I
PK20477.1 Cannabis sativa PK20477.1 N
Pm013209 Prunus mume Pm013209 I
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I
Si010246m.g Setaria italica Si010246m.g N
Si022565m.g Setaria italica Si022565m.g I
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I
TCM_029695 Theobroma cacao TCM_029695 I
TCM_042467 Theobroma cacao TCM_042467 N
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N