Lus10012210.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10012210.g T008784_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.807 0.940
DREB2F
M06630_2.00 		Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR		 Dap-seq
OMalley et al.(2016)
AT3G57600_col_a 		0.767 0.880
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.683 0.760
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.678 0.740
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.678 0.740
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.678 0.740
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.677 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10012210 AP2 27 78

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27810.m000639 Ricinus communis 27810.m000639 I 0.816
30170.m014115 Ricinus communis 30170.m014115 I 0.680
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.803
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.706
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.807
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.684
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.813
Bo4g111040 Brassica oleracea Bo4g111040 I 0.752
Bo6g073020 Brassica oleracea Bo6g073020 I 0.761
Bo6g086320 Brassica oleracea Bo6g086320 I 0.682
Bo6g119660 Brassica oleracea Bo6g119660 I 0.678
Bo8g092010 Brassica oleracea Bo8g092010 I 0.770
Bo9g155940 Brassica oleracea Bo9g155940 I 0.677
Bostr.20903s0012 Boechera stricta Bostr.20903s0012 I 0.767
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.677
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.678
Bra002159 Brassica rapa Bra002159 I 0.677
Bra003752 Brassica rapa Bra003752 I 0.682
Bra007341 Brassica rapa Bra007341 I 0.770
Bra014617 Brassica rapa Bra014617 I 0.752
Bra015840 Brassica rapa Bra015840 I 0.678
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.813
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.680
Cagra.0578s0089 Capsella grandiflora Cagra.0578s0089 I 0.767
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.678
Carubv10017800m.g Capsella rubella Carubv10017800m.g I 0.767
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.678
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.816
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.816
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.680
Ca_07264 Cicer arietinum Ca_07264 I 0.816
chr1.CM0318.570.nd Lotus japonicus chr1.CM0318.570.nd I 0.777
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.680
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.807
Cla006713 Citrullus lanatus Cla006713 I 0.680
Cla012194 Citrullus lanatus Cla012194 I 0.685
Cla017778 Citrullus lanatus Cla017778 I 0.780
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.681
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.773
DREB2A Oryza sativa OS01G0165000 I 0.684
DREB2D Arabidopsis thaliana AT1G75490 D 0.678
DREB2E Oryza sativa OS03G0174400 I 0.813
DREB2F Arabidopsis thaliana AT3G57600 D 0.767
DREB2G Arabidopsis thaliana AT5G18450 D 0.677
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.793
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.695
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.681
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.813
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.760
e_gw1.292.36.1 Physcomitrella patens e_gw1.292.36.1 I 0.744
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.678
fgenesh2_kg.5__2201__AT3G57600.1 Arabidopsis lyrata fgenesh2_kg.5__2201__AT3G57600.1 I 0.767
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.680
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.816
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.813
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.816
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.813
GLYMA14G32210 Glycine max GLYMA14G32210 I 0.813
GLYMA19G04461 Glycine max GLYMA19G04461 I 0.772
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.816
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.679
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I 0.801
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.804
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.813
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.813
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.688
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.698
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.678
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.806
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.822
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.687
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.683
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.683
MDP0000250927 Malus domestica MDP0000250927 I 0.681
MDP0000703626 Malus domestica MDP0000703626 I 0.810
MDP0000871361 Malus domestica MDP0000871361 I 0.810
mgf017629m Mimulus guttatus mgf017629m I 0.699
mgf024545m Mimulus guttatus mgf024545m I 0.681
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.683
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.816
OB01G13930 Oryza brachyantha OB01G13930 I 0.684
OBART01G04210 Oryza barthii OBART01G04210 I 0.684
OBART03G05550 Oryza barthii OBART03G05550 I 0.813
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.684
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.813
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.684
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.684
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.813
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.684
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.813
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.684
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.813
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.680
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.807
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.684
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.684
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.813
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.813
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.813
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.683
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.816
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.679
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.682
PK07402.1 Cannabis sativa PK07402.1 D 0.683
PK08602.1 Cannabis sativa PK08602.1 D 0.807
Pm003634 Prunus mume Pm003634 I 0.690
Pm025865 Prunus mume Pm025865 I 0.810
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.678
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.807
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.681
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.816
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I 0.810
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.690
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.816
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.806
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.695
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.695
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.677
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.780
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.711
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.711
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.780
Si002067m.g Setaria italica Si002067m.g I 0.678
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.679
Solyc10g080310.1 Solanum lycopersicum Solyc10g080310.1 I 0.764
TCM_024756 Theobroma cacao TCM_024756 I 0.807
Thhalv10006489m.g Eutrema salsugineum Thhalv10006489m.g I 0.761
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.677
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.678
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.813
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.816