Pavir.Ib00517 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ib00517 T009522_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.811 0.940
DREB2F
M06630_2.00 		Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR		 Dap-seq
OMalley et al.(2016)
AT3G57600_col_a 		0.761 0.860
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.684 0.800
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.682 0.760
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.679 0.780
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.679 0.780
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.679 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib00517.1.p AP2 27 78

Links

Other AP2 family TFs
Other Panicum virgatum TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27810.m000639 Ricinus communis 27810.m000639 I 0.821
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.813
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.706
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.811
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.683
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.823
Bo4g111040 Brassica oleracea Bo4g111040 I 0.746
Bo6g073020 Brassica oleracea Bo6g073020 I 0.765
Bo6g086320 Brassica oleracea Bo6g086320 I 0.682
Bo6g119660 Brassica oleracea Bo6g119660 I 0.679
Bo8g092010 Brassica oleracea Bo8g092010 I 0.764
Bo9g155940 Brassica oleracea Bo9g155940 I 0.682
Bostr.20903s0012 Boechera stricta Bostr.20903s0012 I 0.761
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.682
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.679
Bra002159 Brassica rapa Bra002159 I 0.682
Bra003752 Brassica rapa Bra003752 I 0.682
Bra007341 Brassica rapa Bra007341 I 0.764
Bra014617 Brassica rapa Bra014617 I 0.746
Bra015840 Brassica rapa Bra015840 I 0.679
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.823
Cagra.0578s0089 Capsella grandiflora Cagra.0578s0089 I 0.761
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.677
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.679
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.677
Carubv10017800m.g Capsella rubella Carubv10017800m.g I 0.761
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.679
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.821
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.821
Ca_07264 Cicer arietinum Ca_07264 I 0.821
chr1.CM0318.570.nd Lotus japonicus chr1.CM0318.570.nd I 0.781
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.811
Cla012194 Citrullus lanatus Cla012194 I 0.682
Cla017778 Citrullus lanatus Cla017778 I 0.785
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.677
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.777
DREB2A Oryza sativa OS01G0165000 I 0.683
DREB2D Arabidopsis thaliana AT1G75490 D 0.679
DREB2E Oryza sativa OS03G0174400 I 0.823
DREB2F Arabidopsis thaliana AT3G57600 D 0.761
DREB2G Arabidopsis thaliana AT5G18450 D 0.682
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.798
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.691
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.678
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.677
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.803
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.677
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.760
e_gw1.292.36.1 Physcomitrella patens e_gw1.292.36.1 I 0.751
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.679
fgenesh2_kg.5__2201__AT3G57600.1 Arabidopsis lyrata fgenesh2_kg.5__2201__AT3G57600.1 I 0.761
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.681
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.821
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.823
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.821
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.823
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.677
GLYMA14G32210 Glycine max GLYMA14G32210 I 0.817
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.677
GLYMA19G04461 Glycine max GLYMA19G04461 I 0.777
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.821
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I 0.805
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.805
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.823
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.823
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.686
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.695
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.817
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.813
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.813
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.677
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.686
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.686
MDP0000250927 Malus domestica MDP0000250927 I 0.682
MDP0000703626 Malus domestica MDP0000703626 I 0.814
MDP0000871361 Malus domestica MDP0000871361 I 0.814
mgf017629m Mimulus guttatus mgf017629m I 0.695
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.679
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.821
OB01G13930 Oryza brachyantha OB01G13930 I 0.683
OBART01G04210 Oryza barthii OBART01G04210 I 0.683
OBART03G05550 Oryza barthii OBART03G05550 I 0.823
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.683
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.823
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.683
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.683
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.823
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.683
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.823
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.683
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.823
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.811
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.683
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.683
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.823
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.823
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.679
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.821
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.682
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.678
PK07402.1 Cannabis sativa PK07402.1 D 0.684
PK08602.1 Cannabis sativa PK08602.1 D 0.811
Pm003634 Prunus mume Pm003634 I 0.690
Pm025865 Prunus mume Pm025865 I 0.814
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.801
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.684
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.821
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I 0.814
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.690
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.821
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.796
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.698
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.698
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.682
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.773
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.701
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.701
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.773
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.682
Solyc10g080310.1 Solanum lycopersicum Solyc10g080310.1 I 0.768
TCM_024756 Theobroma cacao TCM_024756 I 0.811
Thhalv10006489m.g Eutrema salsugineum Thhalv10006489m.g I 0.755
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.682
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.679
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.813
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.821