evm.TU.supercontig_2.118 (Carica papaya)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 evm.TU.supercontig_2.118 T142904_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.811 0.955
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.811 0.955
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_2.118 C2H2 ZF 135 156
evm.model.supercontig_2.118 C2H2 ZF 155 182

Links

Other C2H2 ZF family TFs
Other Carica papaya TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g104770 Brassica oleracea Bo9g104770 I 0.000
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.000
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.000
Bra028290 Brassica rapa Bra028290 I 0.000
BRADI1G49560 Brachypodium distachyon BRADI1G49560 I 0.000
BRADI1G49570 Brachypodium distachyon BRADI1G49570 I 0.000
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.000
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.000
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.000
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.000
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.000
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.000
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.000
Cla002362 Citrullus lanatus Cla002362 I 0.000
Cla006315 Citrullus lanatus Cla006315 I 0.000
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.000
DREB1C Arabidopsis thaliana AT4G25470 D 0.000
DREB1C Oryza indica BGIOSGA022219 N 0.000
DREB1C Oryza sativa OS06G0127100 N 0.000
DREB1D Arabidopsis thaliana AT5G51990 D 0.000
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.000
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.000
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.000
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.000
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.000
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.000
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.000
GRMZM2G380377 Zea mays GRMZM2G380377 N 0.000
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.000
LPERR06G01360 Leersia perrieri LPERR06G01360 N 0.000
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.000
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.000
mgf026642m Mimulus guttatus mgf026642m I 0.000
OMERI06G01670 Oryza meridionalis OMERI06G01670 N 0.000
ONIVA06G01850 Oryza nivara ONIVA06G01850 N 0.000
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.000
ORUFI06G01550 Oryza rufipogon ORUFI06G01550 N 0.000
Pavir.J35991 Panicum virgatum Pavir.J35991 N 0.000
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.000
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.000
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.000
PK23332.1 Cannabis sativa PK23332.1 I 0.000
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.000
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.000
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.000
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.000
Sb10g001620 Sorghum bicolor Sb10g001620 N 0.000
Si007199m.g Setaria italica Si007199m.g N 0.000
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.000
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.000
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.000
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.000
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.000