Gorai.005G259100 (Gossypium raimondii)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Gorai.005G259100 T321157_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.857 0.857
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.796 0.796
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.005G259100.1 RWP-RK 496 544

Links

Other RWP-RK family TFs
Other Gossypium raimondii TFs

404 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30199.m000879 Ricinus communis 30199.m000879 I
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I
cassava15247.m1 Manihot esculenta cassava15247.m1 I
Ca_06495 Cicer arietinum Ca_06495 I
Ca_13275 Cicer arietinum Ca_13275 I
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N
evm.TU.contig_35868 Carica papaya evm.TU.contig_35868 N
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I
evm.TU.supercontig_100.22 Carica papaya evm.TU.supercontig_100.22 N
evm.TU.supercontig_100.9 Carica papaya evm.TU.supercontig_100.9 N
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I
evm.TU.supercontig_185.6 Carica papaya evm.TU.supercontig_185.6 N
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N
evm.TU.supercontig_4.187 Carica papaya evm.TU.supercontig_4.187 N
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I
GLYMA18G04760 Glycine max GLYMA18G04760 I
Gorai.004G229600 Gossypium raimondii Gorai.004G229600 N
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I
Lus10014578.g Linum usitatissimum Lus10014578.g I
Lus10032108.g Linum usitatissimum Lus10032108.g I
MDP0000846004 Malus domestica MDP0000846004 I
MDP0000925348 Malus domestica MDP0000925348 I
mgf026186m Mimulus guttatus mgf026186m I
MTR_3g065100 Medicago truncatula MTR_3g065100 I
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N
Pm004396 Prunus mume Pm004396 I
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I
PRUPE_ppa022799mg Prunus persica PRUPE_ppa022799mg N
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I
TCM_026842 Theobroma cacao TCM_026842 I
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I