ENSPPYG00000001290 (Pongo abelii)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03165 (MH1) IPR003619 ENSPPYG00000001290 T324892_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NFIA
M03480_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIA_1 		1.000 1.000
NFIA
M03481_2.00 		Homo sapiens
NNTGCCAANN
NNTTGGCANN		 SELEX
Jolma et al.(2013)
NFIA_2 		1.000 1.000
NFIA
M09379_2.00 		Homo sapiens
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C 		1.000 1.000
Nfia
M09383_2.00 		Mus musculus
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C 		1.000 1.000
NFIA
M11282_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1A_Q6_01 		1.000 1.000
Nfia
M11291_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFIA_02 		1.000 1.000
NFIB
M03479_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIB_1 		0.934 0.934
NFIX
M03475_2.00 		Homo sapiens
YTGGCNNNNTGCCAA
TTGGCANNNNGCCAR		 SELEX
Jolma et al.(2013)
NFIX_1 		0.934 0.934
NFIX
M03476_2.00 		Homo sapiens
NYTGGCDNN
NNHGCCARN		 SELEX
Jolma et al.(2013)
NFIX_2 		0.934 0.934
NFIX
M03477_2.00 		Homo sapiens
NYTGGCWNN
NNWGCCARN		 SELEX
Jolma et al.(2013)
NFIX_3 		0.934 0.934
NFIX
M03478_2.00 		Homo sapiens
TTGGCANNNTGCCAR
YTGGCANNNTGCCAA		 SELEX
Jolma et al.(2013)
NFIX_4 		0.934 0.934
NFIB
M05747_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX 		0.934 0.934
NFIX
M05741_2.00 		Homo sapiens
NHTGGCDNNNTGCCADN
NHTGGCANNNHGCCADN		 SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX 		0.934 0.934
Nfib
M09381_2.00 		Mus musculus
BVWGCCARV
BYTGGCWBV		 Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C 		0.934 0.934
NFIB
M11280_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6_01 		0.934 0.934
NFIB
M11281_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6 		0.934 0.934
NFIB
M05748_2.00 		Homo sapiens
NTTGGCDNNNTGCCARN
NYTGGCANNNHGCCAAN		 SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX 		0.934 0.934
NFIX
M05742_2.00 		Homo sapiens
NYTGGCDNNNTGCCARN
NYTGGCANNNHGCCARN		 SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX 		0.934 0.934
Nfic
M09385_2.00 		Mus musculus
NBYTGGCWN
NWGCCARVN		 Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A 		0.868 0.868
NFIC
M05745_2.00 		Homo sapiens
NTTGGCNNNNTGCCARN
NYTGGCANNNNGCCAAN		 SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX 		0.857 0.857
NFIC
M08164_2.00 		Homo sapiens
NNCTTGGCANN
NNTGCCAAGNN		 ChIP-seq
Mathelier et al.(2014)
MA0161.2 		0.857 0.857
NFIC
M09378_2.00 		Homo sapiens
BYTGGMHBYNDKCCMRV
BYKGGMHNRVDKCCARV		 Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A 		0.857 0.857
NFIC
M09635_2.00 		Homo sapiens
BYTGSCAV
BTGSCARV		 Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished 		0.857 0.857
NFIC
M09636_2.00 		Homo sapiens
BYTGGCHNNNDGCCAR
YTGGCHNNNDGCCARV		 Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished 		0.857 0.857
NFIC
M11278_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CTF1_01 		0.857 0.857
NFIC
M11279_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1C_Q6 		0.857 0.857
NFIC
M05746_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX 		0.857 0.857
NfI
M03968_2.00 		Drosophila melanogaster
YTGGCDNNNHGCCAR
YTGGCDNNNHGCCAR		 SELEX
Nitta et al.(2015)
NfI_1 		0.780 0.780
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPPYP00000001505 SMAD 68 172

Links

Other SMAD family TFs
Other Pongo abelii TFs

362 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30072.m000955 Ricinus communis 30072.m000955 I
30174.m008897 Ricinus communis 30174.m008897 I
30174.m008898 Ricinus communis 30174.m008898 I
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I
BGIOSGA011118 Oryza indica BGIOSGA011118 I
BGIOSGA032254 Oryza indica BGIOSGA032254 I
Bo1g153580 Brassica oleracea Bo1g153580 I
Bo2g097560 Brassica oleracea Bo2g097560 I
Bo4g024610 Brassica oleracea Bo4g024610 I
Bo4g024620 Brassica oleracea Bo4g024620 I
Bo4g195520 Brassica oleracea Bo4g195520 I
Bo9g002150 Brassica oleracea Bo9g002150 I
Bo9g002160 Brassica oleracea Bo9g002160 I
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I
Bra004908 Brassica rapa Bra004908 I
Bra004910 Brassica rapa Bra004910 I
Bra008514 Brassica rapa Bra008514 I
Bra036436 Brassica rapa Bra036436 I
Bra037322 Brassica rapa Bra037322 I
Bra037323 Brassica rapa Bra037323 I
Bra040311 Brassica rapa Bra040311 I
Bra040312 Brassica rapa Bra040312 I
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I
Carubv10001875m.g Capsella rubella Carubv10001875m.g I
Carubv10015417m.g Capsella rubella Carubv10015417m.g I
Carubv10025050m.g Capsella rubella Carubv10025050m.g I
Carubv10025477m.g Capsella rubella Carubv10025477m.g I
cassava15337.m1 Manihot esculenta cassava15337.m1 I
cassava25975.m1 Manihot esculenta cassava25975.m1 I
cassava28659.m1 Manihot esculenta cassava28659.m1 I
cassava28672.m1 Manihot esculenta cassava28672.m1 I
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I
cassava40137.m1 Manihot esculenta cassava40137.m1 I
Ca_12213 Cicer arietinum Ca_12213 I
Ca_19598 Cicer arietinum Ca_19598 I
Ca_20428 Cicer arietinum Ca_20428 I
Ca_20429 Cicer arietinum Ca_20429 I
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I
Cla002965 Citrullus lanatus Cla002965 I
Cla007068 Citrullus lanatus Cla007068 I
Cla007069 Citrullus lanatus Cla007069 I
Cla015094 Citrullus lanatus Cla015094 I
Cla021625 Citrullus lanatus Cla021625 I
Cucsa.338130 Cucumis sativus Cucsa.338130 I
Cucsa.362830 Cucumis sativus Cucsa.362830 I
Cucsa.362840 Cucumis sativus Cucsa.362840 I
Cucsa.388160 Cucumis sativus Cucsa.388160 I
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I
GLYMA01G34523 Glycine max GLYMA01G34523 I
GLYMA01G34540 Glycine max GLYMA01G34540 I
GLYMA03G02620 Glycine max GLYMA03G02620 I
GLYMA03G02631 Glycine max GLYMA03G02631 I
GLYMA03G31830 Glycine max GLYMA03G31830 I
GLYMA09G40500 Glycine max GLYMA09G40500 I
GLYMA18G45320 Glycine max GLYMA18G45320 I
GLYMA19G34590 Glycine max GLYMA19G34590 I
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I
GRMZM2G076327 Zea mays GRMZM2G076327 I
GRMZM2G110913 Zea mays GRMZM2G110913 I
GRMZM2G150594 Zea mays GRMZM2G150594 I
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I
LBD18 Arabidopsis thaliana AT2G45420 D
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I
LBD19 Arabidopsis thaliana AT2G45410 D
LBD20 Arabidopsis thaliana AT3G03760 I
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I
LBD20 Vitis vinifera VIT_08s0056g01650 I
LBD30 Arabidopsis thaliana AT4G00220 D
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I
LBD30 Vitis vinifera VIT_15s0048g00830 I
LBD31 Arabidopsis thaliana AT4G00210 I
LBD31 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002970 N
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I
LPERR03G09330 Leersia perrieri LPERR03G09330 I
Lus10009298.g Linum usitatissimum Lus10009298.g I
MDP0000254224 Malus domestica MDP0000254224 I
MDP0000322059 Malus domestica MDP0000322059 I
MDP0000429067 Malus domestica MDP0000429067 I
mgf006429m Mimulus guttatus mgf006429m I
mgf020735m Mimulus guttatus mgf020735m I
MLOC_52276 Hordeum vulgare MLOC_52276 I
MLOC_55239 Hordeum vulgare MLOC_55239 I
MTR_7g074990 Medicago truncatula MTR_7g074990 I
MTR_7g075230 Medicago truncatula MTR_7g075230 I
MTR_7g096530 Medicago truncatula MTR_7g096530 I
MTR_8g036085 Medicago truncatula MTR_8g036085 I
MTR_8g036105 Medicago truncatula MTR_8g036105 I
OB03G20590 Oryza brachyantha OB03G20590 I
OB10G12360 Oryza brachyantha OB10G12360 I
OBART03G10450 Oryza barthii OBART03G10450 I
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I
OLONG_001985 Oryza longistaminata OLONG_001985 I
OLONG_028429 Oryza longistaminata OLONG_028429 I
OMERI03G09680 Oryza meridionalis OMERI03G09680 I
ONIVA10G03250 Oryza nivara ONIVA10G03250 I
OPUNC03G10080 Oryza punctata OPUNC03G10080 I
OPUNC10G02630 Oryza punctata OPUNC10G02630 I
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I
OS03G0246900 Oryza sativa OS03G0246900 I
OS10G0162600 Oryza sativa OS10G0162600 I
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I
Pavir.J34872 Panicum virgatum Pavir.J34872 I
PGSC0003DMG400020069 Solanum tuberosum PGSC0003DMG400020069 I
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I
PK25573.1 Cannabis sativa PK25573.1 I
Pm017935 Prunus mume Pm017935 I
Pm017936 Prunus mume Pm017936 I
Pm028642 Prunus mume Pm028642 I
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I
Sb01g024400 Sorghum bicolor Sb01g024400 I
Sb01g041130 Sorghum bicolor Sb01g041130 I
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I
TCM_004106 Theobroma cacao TCM_004106 I
TCM_005496 Theobroma cacao TCM_005496 I
TCM_005497 Theobroma cacao TCM_005497 I
TCM_025849 Theobroma cacao TCM_025849 I
TCM_042730 Theobroma cacao TCM_042730 I
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I