hmg20a (Danio rerio)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSDARG00000031198 T327848_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.617 0.710
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000095483 Sox 45 113
ENSDARP00000119454 Sox 53 121

Links

Other Sox family TFs
Other Danio rerio TFs

172 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R011684 Calypte anna Aan_R011684 I 0.617
Aan_R011791 Calypte anna Aan_R011791 I 0.675
ACYPI002322 Acyrthosiphon pisum ACYPI002322 I 0.419
Afo_R007008 Aptenodytes forsteri Afo_R007008 I 0.675
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.617
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.617
Alligator_sinensis_CCG010545.1 Alligator sinensis Alligator_sinensis_CCG010545.1 I 0.675
BGIBMGA005325 Bombyx mori BGIBMGA005325 I 0.470
Brh_R011859 Buceros rhinoceros Brh_R011859 I 0.675
CapteG155070 Capitella teleta CapteG155070 I 0.515
CapteG191691 Capitella teleta CapteG191691 I 0.458
CGI_10028818 Crassostrea gigas CGI_10028818 I 0.433
CLEC002862 Cimex lectularius CLEC002862 I 0.484
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.617
Cmyd_10009674 Chelonia mydas Cmyd_10009674 I 0.445
Cmyd_10010094 Chelonia mydas Cmyd_10010094 I 0.642
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.615
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.617
ENSAMEG00000008348 Ailuropoda melanoleuca ENSAMEG00000008348 I 0.666
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I 0.603
ENSAMXG00000013048 Astyanax mexicanus ENSAMXG00000013048 I 0.705
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.625
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.617
ENSAPLG00000015603 Anas platyrhynchos ENSAPLG00000015603 I 0.675
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.617
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I 0.589
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.617
ENSCSAG00000014734 Chlorocebus sabaeus ENSCSAG00000014734 I 0.666
ENSCSAVG00000001086 Ciona savignyi ENSCSAVG00000001086 N 0.418
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.617
ENSFALG00000010751 Ficedula albicollis ENSFALG00000010751 I 0.675
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.617
ENSGALG00000002746 Gallus gallus ENSGALG00000002746 I 0.675
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I 0.623
ENSGMOG00000015452 Gadus morhua ENSGMOG00000015452 I 0.701
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I 0.726
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I 0.576
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I 0.587
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I 0.734
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.617
ENSMEUG00000016429 Macropus eugenii ENSMEUG00000016429 I 0.666
ENSMMUG00000028932 Macaca mulatta ENSMMUG00000028932 I 0.485
ENSMMUP00000031974 Macaca fascicularis ENSMMUP00000031974 I 0.485
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.617
ENSMPUG00000007386 Mustela putorius furo ENSMPUG00000007386 I 0.441
ENSMPUG00000017330 Mustela putorius furo ENSMPUG00000017330 I 0.666
ENSNLEG00000008357 Nomascus leucogenys ENSNLEG00000008357 I 0.666
ENSOARG00000001765 Ovis aries ENSOARG00000001765 I 0.666
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I 0.632
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.617
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.615
ENSONIG00000012862 Oreochromis niloticus ENSONIG00000012862 I 0.705
ENSP00000336856-D1 Bos grunniens ENSP00000336856-D1 I 0.666
ENSP00000371133 Macaca fascicularis ENSP00000371133 I 0.666
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.617
ENSPANG00000015844 Papio anubis ENSPANG00000015844 I 0.666
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.615
ENSPFOG00000014087 Poecilia formosa ENSPFOG00000014087 I 0.705
ENSPPYG00000006683 Pongo abelii ENSPPYG00000006683 I 0.666
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.617
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.617
ENSPSIG00000013006 Pelodiscus sinensis ENSPSIG00000013006 I 0.642
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.617
ENSSHAG00000012311 Sarcophilus harrisii ENSSHAG00000012311 I 0.666
ENSSSCG00000024002 Sus scrofa ENSSSCG00000024002 I 0.666
ENSSTOG00000013818 Ictidomys tridecemlineatus ENSSTOG00000013818 I 0.666
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.617
ENSTSYG00000003485 Tarsius syrichta ENSTSYG00000003485 I 0.666
ENSXMAG00000000587 Xiphophorus maculatus ENSXMAG00000000587 I 0.705
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.615
estExt_fgenesh2_pg.C_1350020 Branchiostoma floridae estExt_fgenesh2_pg.C_1350020 I 0.511
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I 0.665
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I 0.665
estExt_fgenesh2_pg.C_4800003 Branchiostoma floridae estExt_fgenesh2_pg.C_4800003 I 0.511
GB41600 Apis mellifera GB41600 I 0.461
Gfo_R004366 Geospiza fortis Gfo_R004366 I 0.644
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.617
HHAL010521-PA Halyomorpha halys HHAL010521-PA I 0.487
HMEL017569 Heliconius melpomene HMEL017569 I 0.474
HMG20A Anolis carolinensis ENSACAG00000011520 I 0.675
HMG20A Bos taurus ENSBTAG00000020441 I 0.666
HMG20A Canis familiaris ENSCAFG00000018061 I 0.666
HMG20A Choloepus hoffmanni ENSCHOG00000012116 I 0.666
HMG20A Callithrix jacchus ENSCJAG00000011131 I 0.666
HMG20A Cavia porcellus ENSCPOG00000011704 I 0.666
HMG20A Dasypus novemcinctus ENSDNOG00000034143 I 0.666
Hmg20a Dipodomys ordii ENSDORG00000000623 I 0.666
HMG20A Erinaceus europaeus ENSEEUG00000004472 I 0.666
HMG20A Echinops telfairi ENSETEG00000015812 I 0.666
HMG20A Felis catus ENSFCAG00000022539 I 0.666
HMG20A Homo sapiens ENSG00000140382 I 0.666
hmg20a Gasterosteus aculeatus ENSGACG00000003466 I 0.705
HMG20A Gorilla gorilla ENSGGOG00000008439 I 0.666
HMG20A Loxodonta africana ENSLAFG00000018273 I 0.666
HMG20A Meleagris gallopavo ENSMGAG00000003179 I 0.675
HMG20A Microcebus murinus ENSMICG00000011025 I 0.666
HMG20A Myotis lucifugus ENSMLUG00000011648 I 0.666
HMG20A Macaca mulatta ENSMMUG00000007430 I 0.666
HMG20A Monodelphis domestica ENSMODG00000012113 I 0.666
Hmg20a Mus musculus ENSMUSG00000032329 I 0.666
HMG20A Ornithorhynchus anatinus ENSOANG00000009993 I 0.666
HMG20A Oryctolagus cuniculus ENSOCUG00000005648 I 0.666
HMG20A Otolemur garnettii ENSOGAG00000006630 I 0.666
HMG20A Ochotona princeps ENSOPRG00000011000 I 0.472
hmg20a Oryzias latipes ENSORLG00000001794 I 0.705
HMG20A Procavia capensis ENSPCAG00000013879 I 0.666
HMG20A Pan troglodytes ENSPTRG00000007326 I 0.666
Hmg20a Rattus norvegicus ENSRNOG00000016905 I 0.666
HMG20A Sorex araneus ENSSARG00000012609 I 0.626
HMG20A Sus scrofa ENSSSCG00000001871 I 0.666
HMG20A Tupaia belangeri ENSTBEG00000015283 I 0.666
HMG20A Taeniopygia guttata ENSTGUG00000003690 I 0.675
hmg20a Tetraodon nigroviridis ENSTNIG00000008460 I 0.705
hmg20a Takifugu rubripes ENSTRUG00000016127 I 0.705
HMG20A Tursiops truncatus ENSTTRG00000006500 I 0.666
HMG20A Vicugna pacos ENSVPAG00000010013 I 0.666
hmg20a Xenopus tropicalis XB-GENE-955353 I 0.692
hmg20a.L Xenopus laevis XB-GENE-955359 I 0.692
HMG20B Canis familiaris ENSCAFG00000019215 I 0.617
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.625
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.617
hmg20b Danio rerio ENSDARG00000042045 I 0.625
HMG20B Felis catus ENSFCAG00000026167 I 0.617
HMG20B Homo sapiens ENSG00000064961 I 0.617
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.615
HMG20B Gallus gallus ENSGALG00000027838 I 0.617
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.617
HMG20B Loxodonta africana ENSLAFG00000007845 I 0.617
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.617
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.617
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.617
Hmg20b Mus musculus ENSMUSG00000020232 D 0.617
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.617
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.617
hmg20b Oryzias latipes ENSORLG00000004640 I 0.615
HMG20B Procavia capensis ENSPCAG00000010772 I 0.617
HMG20B Pteropus vampyrus ENSPVAG00000004300 I 0.437
Hmg20b Rattus norvegicus ENSRNOG00000020601 I 0.617
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.617
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I 0.615
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.617
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.624
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.624
hmg20b.S Xenopus laevis XB-GENE-17338323 I 0.624
Hsal_13222--XP_625193.1_APIME Harpegnathos saltator Hsal_13222--XP_625193.1_APIME I 0.461
KGM_20768 Danaus plexippus KGM_20768 N 0.428
L798_15457 Zootermopsis nevadensis L798_15457 I 0.514
LDEC010438 Leptinotarsa decemlineata LDEC010438 I 0.441
LotgiG196090 Lottia gigantea LotgiG196090 I 0.530
LotgiG231408 Lottia gigantea LotgiG231408 I 0.431
MCINX003064 Melitaea cinxia MCINX003064 I 0.488
Myotis_brandtii_HMG20A_10005450 Myotis brandtii Myotis_brandtii_HMG20A_10005450 I 0.666
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.617
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I 0.648
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I 0.615
NV11068 Nasonia vitripennis NV11068 I 0.492
Ocbimv22031259m.g Octopus bimaculoides Ocbimv22031259m.g I 0.565
Pvit_01997 Pogona vitticeps Pvit_01997 I 0.675
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.617
RPRC008043 Rhodnius prolixus RPRC008043 I 0.449
Sakowv30005216m.g Saccoglossus kowalevskii Sakowv30005216m.g I 0.467
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I 0.590
SMAR000790 Strigamia maritima SMAR000790 I 0.551
SMAR002604 Strigamia maritima SMAR002604 I 0.512
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I 0.601
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I 0.601
Tal_R006697 Tyto alba Tal_R006697 I 0.675
TriadG23407 Trichoplax adhaerens TriadG23407 I 0.611
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I 0.539
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I 0.539
YQE_04289 Dendroctonus ponderosae YQE_04289 N 0.427