Phatr3_J33840 (Phaeodactylum tricornutum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Phatr3_J33840 T331909_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Phatr3_J33840.p1 Sox 62 85
Phatr3_J33840.p1 Sox 96 146

Links

Other Sox family TFs
Other Phaeodactylum tricornutum TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh2_kg.C_130080 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_130080 N 0.487
estExt_Genewise1.C_120062 Heterobasidion annosum estExt_Genewise1.C_120062 N 0.430
estExt_Genewise1Plus.C_70298 Fragilariopsis cylindrus estExt_Genewise1Plus.C_70298 N 0.441
fgenesh2_pg.4_#_1036 Fragilariopsis cylindrus fgenesh2_pg.4_#_1036 N 0.518
fgenesh2_pg.9_#_353 Fragilariopsis cylindrus fgenesh2_pg.9_#_353 N 0.508
fgenesh2_pg.9_#_75 Fragilariopsis cylindrus fgenesh2_pg.9_#_75 N 0.491
GLOINDRAFT_9339 Rhizophagus irregularis GLOINDRAFT_9339 N 0.423
GPLIN_000170600 Globodera pallida GPLIN_000170600 N 0.477
HETIRDRAFT_460226 Heterobasidion irregulare HETIRDRAFT_460226 N 0.430
MAM_05902 Metarhizium album MAM_05902 N 0.440
MCOS_0000664501 Mesocestoides corti MCOS_0000664501 N 0.431
Moror_8439 Moniliophthora roreri Moror_8439 N 0.426
NCLIV_023590 Neospora caninum NCLIV_023590 N 0.442
PAS_chr1-1_0442 Komagataella pastoris PAS_chr1-1_0442 N 0.476
PAS_chr3_1149 Komagataella pastoris PAS_chr3_1149 N 0.418
Phatr3_J38097 Phaeodactylum tricornutum Phatr3_J38097 N 0.486
Phatr3_J39045 Phaeodactylum tricornutum Phatr3_J39045 N 0.433
Phatr3_J47350 Phaeodactylum tricornutum Phatr3_J47350 N 0.460
Phatr3_J49506 Phaeodactylum tricornutum Phatr3_J49506 N 0.418
Phatr3_J49937 Phaeodactylum tricornutum Phatr3_J49937 N 0.440
Phatr3_J49938 Phaeodactylum tricornutum Phatr3_J49938 N 0.476
Phatr3_J50240 Phaeodactylum tricornutum Phatr3_J50240 N 0.608
Phatr3_J50336 Phaeodactylum tricornutum Phatr3_J50336 N 0.499
S40285_05706 Stachybotrys chlorohalonata S40285_05706 N 0.477
SAKL0C03872g Lachancea kluyveri SAKL0C03872g N 0.416
SAKL0C03916g Lachancea kluyveri SAKL0C03916g N 0.416
SAKL0C10648g Lachancea kluyveri SAKL0C10648g N 0.422
TGME49_081900 Toxoplasma gondii TGME49_081900 N 0.444
Thaps11168 Thalassiosira pseudonana Thaps11168 N 0.523
Thaps12024 Thalassiosira pseudonana Thaps12024 N 0.509
Thaps22889 Thalassiosira pseudonana Thaps22889 N 0.455
Thaps25909 Thalassiosira pseudonana Thaps25909 N 0.480
Thaps4075 Thalassiosira pseudonana Thaps4075 N 0.422
Thaps4076 Thalassiosira pseudonana Thaps4076 N 0.422
Thaps5285 Thalassiosira pseudonana Thaps5285 N 0.519
Thapsdraft651 Thalassiosira pseudonana Thapsdraft651 N 0.430
TSTA_110260 Talaromyces stipitatus TSTA_110260 N 0.415
UCREL1_5722 Eutypa lata UCREL1_5722 N 0.468
XP_002490100.1 Pichia pastoris XP_002490100.1 N 0.476
XP_002492281.1 Pichia pastoris XP_002492281.1 N 0.418