irf4a (Danio rerio)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSDARG00000006560 T244009_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF4
M03334_2.00 		Homo sapiens
HCGAAACCGAAACYW
WRGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF4_1 		0.914 0.914
IRF4
M05539_2.00 		Homo sapiens
NYGAAACYGAAACYN
NRGTTTCRGTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_HT-SELEX 		0.914 0.914
IRF4
M07978_2.00 		Homo sapiens
DNDVNNGWWVTGAVWVWN
NWBWBTCABWWCNNBHNH		 ChIP-seq
Gerstein et al.(2012)
GM12878_IRF4_HudsonAlpha 		0.914 0.914
IRF4
M09235_2.00 		Homo sapiens
NDWDRRGGAASTGARAVH
DBTYTCASTTCCYYHWHN		 Misc
Kulakovskiy et al.(2013)
IRF4_HUMAN.H11MO.0.A 		0.914 0.914
IRF4
M09595_2.00 		Homo sapiens
HNYGAAASYD
HRSTTTCRND		 Misc
Heinz et al.(2010)
GM12878-IRF4_GSE32465 		0.914 0.914
IRF4
M10885_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_07 		0.914 0.914
IRF4
M10886_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_08 		0.914 0.914
IRF4
M10887_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5_01 		0.914 0.914
IRF4
M10888_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5 		0.914 0.914
IRF4
M10889_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q6 		0.914 0.914
IRF4
M05540_2.00 		Homo sapiens
NYGAAASYGAWASHN
NDSTWTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_Methyl-HT-SELEX 		0.914 0.914
Irf4
M00175_2.00 		Mus musculus
NNNYGAWASN
NSTWTCRNNN		 PBM
Badis et al.(2009)
Irf4_3476 		0.905 0.905
Irf4
M09243_2.00 		Mus musculus
NDAWVVRGAASTGARAVH
DBTYTCASTTCYBBWTHN		 Misc
Kulakovskiy et al.(2013)
IRF4_MOUSE.H11MO.0.A 		0.905 0.905
Irf8
M09246_2.00 		Mus musculus
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_MOUSE.H11MO.0.A 		0.781 0.781
IRF8
M03335_2.00 		Homo sapiens
HCGAAACYGAAACY
RGTTTCRGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_1 		0.762 0.762
IRF8
M03336_2.00 		Homo sapiens
HCGAAACCGAAACT
AGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_2 		0.762 0.762
IRF8
M05541_2.00 		Homo sapiens
NYGAAASYGAAASHN
NDSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_HT-SELEX 		0.762 0.762
IRF8
M05543_2.00 		Homo sapiens
NCGAAACYGAAACYN
NRGTTTCRGTTTCGN		 SELEX
Yin et al.(2017)
IRF8_FL_HT-SELEX 		0.762 0.762
IRF8
M09236_2.00 		Homo sapiens
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_HUMAN.H11MO.0.B 		0.762 0.762
IRF8
M10890_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ICSBP_Q6 		0.762 0.762
IRF8
M10891_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF8_Q6 		0.762 0.762
IRF8
M05542_2.00 		Homo sapiens
NYGAAASYGAAASYN
NRSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_Methyl-HT-SELEX 		0.762 0.762
IRF8
M05544_2.00 		Homo sapiens
NYGAAASYGAAACYD
HRGTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_FL_Methyl-HT-SELEX 		0.762 0.762
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000005897 IRF 17 122

Links

Other IRF family TFs
Other Danio rerio TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I
fgenesh2_kg.5__2201__AT3G57600.1 Arabidopsis lyrata fgenesh2_kg.5__2201__AT3G57600.1 I
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I
DREB2D Arabidopsis thaliana AT1G75490 D
DREB2F Arabidopsis thaliana AT3G57600 D
DREB2G Arabidopsis thaliana AT5G18450 D
Bostr.20903s0012 Boechera stricta Bostr.20903s0012 I
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I
Bo4g111040 Brassica oleracea Bo4g111040 I
Bo6g073020 Brassica oleracea Bo6g073020 I
Bo6g086320 Brassica oleracea Bo6g086320 I
Bo6g119660 Brassica oleracea Bo6g119660 I
Bo8g092010 Brassica oleracea Bo8g092010 I
Bo9g155940 Brassica oleracea Bo9g155940 I
Bra002159 Brassica rapa Bra002159 I
Bra003752 Brassica rapa Bra003752 I
Bra007341 Brassica rapa Bra007341 I
Bra014617 Brassica rapa Bra014617 I
Bra015840 Brassica rapa Bra015840 I
PK07402.1 Cannabis sativa PK07402.1 D
PK08602.1 Cannabis sativa PK08602.1 D
Cagra.0578s0089 Capsella grandiflora Cagra.0578s0089 I
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I
Carubv10002425m.g Capsella rubella Carubv10002425m.g I
Carubv10017800m.g Capsella rubella Carubv10017800m.g I
Carubv10020960m.g Capsella rubella Carubv10020960m.g I
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I
Ca_07264 Cicer arietinum Ca_07264 I
Cla012194 Citrullus lanatus Cla012194 I
Cla017778 Citrullus lanatus Cla017778 I
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I
Cucsa.136780 Cucumis sativus Cucsa.136780 I
Cucsa.336890 Cucumis sativus Cucsa.336890 I
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I
Thhalv10006489m.g Eutrema salsugineum Thhalv10006489m.g I
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I
GLYMA02G31350 Glycine max GLYMA02G31350 I
GLYMA03G29530 Glycine max GLYMA03G29530 I
GLYMA10G21850 Glycine max GLYMA10G21850 I
GLYMA14G07620 Glycine max GLYMA14G07620 I
GLYMA14G32210 Glycine max GLYMA14G32210 I
GLYMA17G37350 Glycine max GLYMA17G37350 I
GLYMA19G04461 Glycine max GLYMA19G04461 I
GLYMA19G32380 Glycine max GLYMA19G32380 I
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I
LPERR03G04860 Leersia perrieri LPERR03G04860 I
Lus10011319.g Linum usitatissimum Lus10011319.g I
Lus10012210.g Linum usitatissimum Lus10012210.g I
Lus10012226.g Linum usitatissimum Lus10012226.g I
Lus10023633.g Linum usitatissimum Lus10023633.g I
Lus10034902.g Linum usitatissimum Lus10034902.g I
chr1.CM0318.570.nd Lotus japonicus chr1.CM0318.570.nd I
MDP0000250927 Malus domestica MDP0000250927 I
MDP0000703626 Malus domestica MDP0000703626 I
MDP0000871361 Malus domestica MDP0000871361 I
cassava15495.m1 Manihot esculenta cassava15495.m1 I
cassava39243.m1 Manihot esculenta cassava39243.m1 I
MTR_5g083340 Medicago truncatula MTR_5g083340 I
MTR_7g092190 Medicago truncatula MTR_7g092190 I
mgf017629m Mimulus guttatus mgf017629m I
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I
OBART01G04210 Oryza barthii OBART01G04210 I
OBART03G05550 Oryza barthii OBART03G05550 I
OB01G13930 Oryza brachyantha OB01G13930 I
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I
BGIOSGA002846 Oryza indica BGIOSGA002846 I
BGIOSGA011963 Oryza indica BGIOSGA011963 I
OLONG_014228 Oryza longistaminata OLONG_014228 I
OMERI01G04110 Oryza meridionalis OMERI01G04110 I
ONIVA01G04630 Oryza nivara ONIVA01G04630 I
ONIVA03G05350 Oryza nivara ONIVA03G05350 I
OPUNC01G03970 Oryza punctata OPUNC01G03970 I
OPUNC03G05230 Oryza punctata OPUNC03G05230 I
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I
DREB2A Oryza sativa OS01G0165000 I
DREB2E Oryza sativa OS03G0174400 I
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I
e_gw1.292.36.1 Physcomitrella patens e_gw1.292.36.1 I
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I
Pm003634 Prunus mume Pm003634 I
Pm025865 Prunus mume Pm025865 I
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I
27810.m000639 Ricinus communis 27810.m000639 I
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I
Solyc10g080310.1 Solanum lycopersicum Solyc10g080310.1 I
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I
TCM_024756 Theobroma cacao TCM_024756 I
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I
GRMZM2G376255 Zea mays GRMZM2G376255 I
GRMZM2G399098 Zea mays GRMZM2G399098 I
GRMZM2G419901 Zea mays GRMZM2G419901 I