VIT_08s0058g00200 (Vitis vinifera)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 VIT_08s0058g00200 T249995_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05550
M06978_2.00 		Arabidopsis thaliana
HNDYCGCCGGMRWND
HNWYKCCGGCGRHND		 Dap-seq
OMalley et al.(2016)
AT5G05550_col_a 		0.815 0.691
AT5G05550
M06979_2.00 		Arabidopsis thaliana
HYNYCGCCGGARWHD
HDWYTCCGGCGRNRD		 Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a 		0.815 0.691
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_08s0058g00200.t01 MADF 44 118

Links

Other MADF family TFs
Other Vitis vinifera TFs

95 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.889
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.844
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.881
Aquca_039_00151 Aquilegia coerulea Aquca_039_00151 N 0.856
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.825
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.871
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.871
AT5G05550 Arabidopsis thaliana AT5G05550 D 0.815
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.825
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.871
Bostr.13129s0416 Boechera stricta Bostr.13129s0416 I 0.828
Bo5g136850 Brassica oleracea Bo5g136850 I 0.871
Bra034165 Brassica rapa Bra034165 I 0.863
Bra034866 Brassica rapa Bra034866 I 0.872
PK22475.1 Cannabis sativa PK22475.1 N 0.841
PK20477.1 Cannabis sativa PK20477.1 N 0.882
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.879
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.935
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.815
Cla015773 Citrullus lanatus Cla015773 I 0.884
Cla019967 Citrullus lanatus Cla019967 I 0.818
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.922
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.909
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.909
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.922
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.818
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.818
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.884
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.871
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.940
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.885
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.821
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.873
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.910
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.910
Lus10025406.g Linum usitatissimum Lus10025406.g N 0.828
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.828
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.828
Lus10007273.g Linum usitatissimum Lus10007273.g N 0.812
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.818
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.863
MDP0000097759 Malus domestica MDP0000097759 N 0.945
MDP0000255104 Malus domestica MDP0000255104 I 0.885
MDP0000281471 Malus domestica MDP0000281471 I 0.897
MDP0000943251 Malus domestica MDP0000943251 N 0.932
MDP0000301451 Malus domestica MDP0000301451 I 0.815
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.910
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.843
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.843
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.843
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.843
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.839
mgf000047m Mimulus guttatus mgf000047m I 0.899
mgf001239m Mimulus guttatus mgf001239m N 0.830
mgf006505m Mimulus guttatus mgf006505m I 0.926
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.913
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.853
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.849
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.850
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.845
OBART05G25610 Oryza barthii OBART05G25610 I 0.819
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.819
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.819
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.819
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.819
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.819
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.819
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.819
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.819
OS05G0560600 Oryza sativa OS05G0560600 I 0.819
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.821
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.821
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.874
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.928
Pm013209 Prunus mume Pm013209 I 0.886
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.915
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.886
29900.m001628 Ricinus communis 29900.m001628 I 0.843
29814.m000741 Ricinus communis 29814.m000741 I 0.936
29727.m000472 Ricinus communis 29727.m000472 I 0.843
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.865
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.937
Si022565m.g Setaria italica Si022565m.g I 0.821
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.849
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.895
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.947
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.849
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.947
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.855
TCM_029209 Theobroma cacao TCM_029209 I 0.843
TCM_042467 Theobroma cacao TCM_042467 N 0.957
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.884
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N 0.817
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.837
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.821