Ppa-nhr-3 (Pristionchus pacificus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 PPA28597 T305939_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-34
M00690_2.00 		Caenorhabditis elegans
NNNNDHYRNN
NNYRDHNNNN		 PBM
Narasimhan et al.(2015)
pTH9907 		0.817 0.514
GA30480
M02409_2.00 		Drosophila pseudoobscura
RAGATCAM
KTGATCTY		 PBM
Weirauch et al.(2014)
pTH5877 		0.802 0.571
Hr51
M06432_2.00 		Drosophila melanogaster
AMRDATCARARGW
WCYTYTGATHYKT		 B1H
Zhu et al.(2011)
Hr51_SANGER_5_FBgn0034012 		0.802 0.571
NR2E3
M00373_2.00 		Homo sapiens
NRAGATCAMN
NKTGATCTYN		 PBM
Barrera et al.(2016)
NR2E3_REF 		0.782 0.543
Nr2e3
M02708_2.00 		Mus musculus
AAGCTTD
HAAGCTT		 SELEX
Mathelier et al.(2014)
MA0164.1 		0.782 0.543
Nr2e3
M09328_2.00 		Mus musculus
NAAGTCAAAARKCA
TGMYTTTTGACTTN		 Misc
Kulakovskiy et al.(2013)
NR2E3_MOUSE.H11MO.0.C 		0.782 0.543
NR2E3
M00372_2.00 		Homo sapiens
AAAGATCA
TGATCTTT		 PBM
Barrera et al.(2016)
NR2E3_R77Q 		0.782 0.543
NR2E3
M00370_2.00 		Homo sapiens
NNNWRABATCANN
NNTGATVTYWNNN		 PBM
Barrera et al.(2016)
NR2E3_R76Q 		0.755 0.529
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PPA28597 Nuclear receptor 46 115

Links

Other Nuclear receptor family TFs
Other Pristionchus pacificus TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g01891 Acanthocheilonema viteae nAv.1.0.1.g01891 I 0.767
ACYPI007601 Acyrthosiphon pisum ACYPI007601 I 0.803
AAEL007190 Aedes aegypti AAEL007190 I 0.806
Alligator_sinensis_CCG020979.1 Alligator sinensis Alligator_sinensis_CCG020979.1 I 0.801
ANCCAN_05510 Ancylostoma caninum ANCCAN_05510 I 0.785
ANCCAN_22066 Ancylostoma caninum ANCCAN_22066 I 0.809
ANCCEY_01724 Ancylostoma ceylanicum ANCCEY_01724 I 0.785
ANCCEY_12461 Ancylostoma ceylanicum ANCCEY_12461 I 0.809
ANCDUO_15746 Ancylostoma duodenale ANCDUO_15746 I 0.809
NR2E3 Anolis carolinensis ENSACAG00000011910 I 0.801
AALB001133 Anopheles albimanus AALB001133 I 0.803
AARA003887 Anopheles arabiensis AARA003887 I 0.803
AATE003142 Anopheles atroparvus AATE003142 I 0.803
ACOM026748 Anopheles coluzzii ACOM026748 I 0.803
ADAC006988 Anopheles darlingi ADAC006988 I 0.803
AEPI011067 Anopheles epiroticus AEPI011067 I 0.803
AFAF011447 Anopheles farauti AFAF011447 I 0.803
AMEM000983 Anopheles merus AMEM000983 I 0.803
GB49738 Apis mellifera GB49738 I 0.802
Afo_R007066 Aptenodytes forsteri Afo_R007066 I 0.783
ASU_00971 Ascaris suum ASU_00971 I 0.817
ASU_07884 Ascaris suum ASU_07884 I 0.785
ENSAMXG00000017872 Astyanax mexicanus ENSAMXG00000017872 I 0.801
BGLB004019 Biomphalaria glabrata BGLB004019 I 0.783
ENSBTAP00000048604-D1 Bos grunniens ENSBTAP00000048604-D1 I 0.782
NR2E3 Bos taurus ENSBTAG00000014236 I 0.782
e_gw.107.44.1 Branchiostoma floridae e_gw.107.44.1 I 0.805
e_gw.324.28.1 Branchiostoma floridae e_gw.324.28.1 I 0.805
Bm4485 Brugia malayi Bm4485 I 0.785
BTMF_0001091401 Brugia timori BTMF_0001091401 I 0.785
BXY_0327700 Bursaphelenchus xylophilus BXY_0327700 I 0.785
CBN00088 Caenorhabditis brenneri CBN00088 I 0.751
CBN05776 Caenorhabditis brenneri CBN05776 I 0.757
CBN21958 Caenorhabditis brenneri CBN21958 I 0.751
CBN22518 Caenorhabditis brenneri CBN22518 I 0.789
CBG03860 Caenorhabditis briggsae CBG03860 I 0.757
CBG14155 Caenorhabditis briggsae CBG14155 I 0.789
CBG14996 Caenorhabditis briggsae CBG14996 I 0.892
CBG22587 Caenorhabditis briggsae CBG22587 I 0.820
fax-1 Caenorhabditis elegans WBGene00001400 I 0.789
nhr-34 Caenorhabditis elegans WBGene00003627 D 0.817
nhr-62 Caenorhabditis elegans WBGene00003652 I 0.757
nhr-138 Caenorhabditis elegans WBGene00003728 I 0.843
CJA07370 Caenorhabditis japonica CJA07370 I 0.789
CJA14248 Caenorhabditis japonica CJA14248 I 0.804
CJA18307 Caenorhabditis japonica CJA18307 I 0.817
CJA19445 Caenorhabditis japonica CJA19445 I 0.757
CRE00427 Caenorhabditis remanei CRE00427 I 0.789
CRE07033 Caenorhabditis remanei CRE07033 I 0.820
CRE07034 Caenorhabditis remanei CRE07034 I 0.833
CRE07035 Caenorhabditis remanei CRE07035 I 0.759
CRE08264 Caenorhabditis remanei CRE08264 I 0.757
CRE09416 Caenorhabditis remanei CRE09416 I 0.865
CRE10779 Caenorhabditis remanei CRE10779 I 0.820
NR2E3 Callithrix jacchus ENSCJAG00000018552 I 0.782
Aan_R004022 Calypte anna Aan_R004022 I 0.783
CapteG171557 Capitella teleta CapteG171557 I 0.783
NR2E3 Cavia porcellus ENSCPOG00000008974 I 0.782
Cmyd_10012017 Chelonia mydas Cmyd_10012017 I 0.801
ENSCSAG00000013721 Chlorocebus sabaeus ENSCSAG00000013721 I 0.782
csin100859 Clonorchis sinensis csin100859 I 0.769
CGI_10007932 Crassostrea gigas CGI_10007932 I 0.801
CGOC_0000187501 Cylicostephanus goldi CGOC_0000187501 I 0.785
nr2e3 Danio rerio ENSDARG00000045904 I 0.803
DAPPUDRAFT_106791 Daphnia pulex DAPPUDRAFT_106791 I 0.823
DICVIV_11193 Dictyocaulus viviparus DICVIV_11193 I 0.785
nDi.2.2.2.g10236 Dirofilaria immitis nDi.2.2.2.g10236 I 0.766
DME_0000747901 Dracunculus medinensis DME_0000747901 I 0.750
GF13031 Drosophila ananassae FBgn0090064 I 0.802
GH20426 Drosophila grimshawi FBgn0127889 I 0.802
Hr51 Drosophila melanogaster FBgn0034012 D 0.802
GI19610 Drosophila mojavensis FBgn0142347 I 0.802
GL17752 Drosophila persimilis FBgn0155355 I 0.802
GA30480 Drosophila pseudoobscura FBgn0264774 D 0.802
GD11109 Drosophila simulans FBgn0182865 I 0.802
GJ14974 Drosophila virilis FBgn0202177 I 0.802
GK20892 Drosophila willistoni FBgn0222886 I 0.802
GE13645 Drosophila yakuba FBgn0231304 I 0.802
ECPE_0000243601 Echinostoma caproni ECPE_0000243601 I 0.787
EVEC_0000864401 Enterobius vermicularis EVEC_0000864401 I 0.817
NR2E3 Equus caballus ENSECAG00000015192 I 0.782
NR2E3 Felis catus ENSFCAG00000031082 I 0.782
ENSFALG00000009699 Ficedula albicollis ENSFALG00000009699 I 0.783
ENSGMOG00000008342 Gadus morhua ENSGMOG00000008342 I 0.759
ENSGMOG00000019194 Gadus morhua ENSGMOG00000019194 I 0.801
NR2E3 Gallus gallus ENSGALG00000002093 I 0.783
nr2e3 Gasterosteus aculeatus ENSGACG00000004739 I 0.784
NR2E3 Gasterosteus aculeatus ENSGACG00000017060 I 0.801
Gfo_R008863 Geospiza fortis Gfo_R008863 I 0.783
GPLIN_000669000 Globodera pallida GPLIN_000669000 I 0.753
GPLIN_000669800 Globodera pallida GPLIN_000669800 I 0.785
NR2E3 Gorilla gorilla ENSGGOG00000004383 I 0.782
HCOI01781300 Haemonchus contortus HCOI01781300 I 0.789
HCOI01927800 Haemonchus contortus HCOI01927800 I 0.807
HCOI01945300 Haemonchus contortus HCOI01945300 I 0.757
HCOI02126500 Haemonchus contortus HCOI02126500 I 0.757
HPLM_0001358001 Haemonchus placei HPLM_0001358001 I 0.757
Hsal_07902--XP_396999.3_APIME Harpegnathos saltator Hsal_07902--XP_396999.3_APIME I 0.802
HelroG139475 Helobdella robusta HelroG139475 I 0.801
Hba_15323 Heterorhabditis bacteriophora Hba_15323 I 0.785
Hba_17038 Heterorhabditis bacteriophora Hba_17038 I 0.757
NR2E3 Homo sapiens ENSG00000278570 D 0.782
ENSSTOG00000012080 Ictidomys tridecemlineatus ENSSTOG00000012080 I 0.782
ENSLACG00000022378 Latimeria chalumnae ENSLACG00000022378 I 0.801
ENSLOCG00000014973 Lepisosteus oculatus ENSLOCG00000014973 I 0.801
LDEC022044 Leptinotarsa decemlineata LDEC022044 I 0.802
nLs.2.1.2.g01701 Litomosoides sigmodontis nLs.2.1.2.g01701 I 0.785
LOAG_06205 Loa loa LOAG_06205 I 0.785
LotgiG137595 Lottia gigantea LotgiG137595 I 0.801
NR2E3 Macaca mulatta ENSMMUG00000019276 I 0.782
ENSMEUG00000016597 Macropus eugenii ENSMEUG00000016597 I 0.802
genemark-nMf.1.1.scaf00188-processed-gene-0.4 Meloidogyne floridensis genemark-nMf.1.1.scaf00188-processed-gene-0.4 I 0.766
maker-nMf.1.1.scaf07948-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf07948-snap-gene-0.4 I 0.753
snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 I 0.753
MhA1_Contig1792.frz3.gene6 Meloidogyne hapla MhA1_Contig1792.frz3.gene6 I 0.766
MhA1_Contig217.frz3.gene7 Meloidogyne hapla MhA1_Contig217.frz3.gene7 I 0.753
Minc01725 Meloidogyne incognita Minc01725 I 0.753
Minc13525 Meloidogyne incognita Minc13525 I 0.753
NR2E3 Monodelphis domestica ENSMODG00000001949 I 0.802
MDOA010244 Musca domestica MDOA010244 I 0.802
ENSMPUG00000017103 Mustela putorius furo ENSMPUG00000017103 I 0.782
Nr2e3 Mus musculus ENSMUSG00000032292 D 0.782
Myotis_brandtii_NR2E3_10027281 Myotis brandtii Myotis_brandtii_NR2E3_10027281 I 0.782
NR2E3 Myotis lucifugus ENSMLUG00000008408 I 0.782
NV14480 Nasonia vitripennis NV14480 I 0.802
NECAME_01944 Necator americanus NECAME_01944 I 0.748
NECAME_02375 Necator americanus NECAME_02375 I 0.809
NBR_0000015501 Nippostrongylus brasiliensis NBR_0000015501 I 0.807
ENSNLEG00000013807 Nomascus leucogenys ENSNLEG00000013807 I 0.782
NR2E3 Ochotona princeps ENSOPRG00000006427 I 0.782
OFLC_0000991001 Onchocerca flexuosa OFLC_0000991001 I 0.785
nOo.2.0.1.g01040 Onchocerca ochengi nOo.2.0.1.g01040 I 0.785
nOo.2.0.1.g10097 Onchocerca ochengi nOo.2.0.1.g10097 I 0.785
nOo.2.0.1.g11611 Onchocerca ochengi nOo.2.0.1.g11611 I 0.785
WBGene00240517 Onchocerca volvulus WBGene00240517 I 0.785
Ogr12843 Ophisaurus gracilis Ogr12843 I 0.801
ENSONIG00000007109 Oreochromis niloticus ENSONIG00000007109 I 0.801
ENSONIG00000015396 Oreochromis niloticus ENSONIG00000015396 I 0.866
NR2E3 Oryzias latipes ENSORLG00000000011 I 0.801
nr2e3 Oryzias latipes ENSORLG00000007175 I 0.821
NR2E3 Otolemur garnettii ENSOGAG00000006128 I 0.782
ENSOARG00000018808 Ovis aries ENSOARG00000018808 I 0.782
NR2E3 Pan troglodytes ENSPTRG00000007242 I 0.782
ENSPANG00000016257 Papio anubis ENSPANG00000016257 I 0.782
PTRK_0000446300 Parastrongyloides trichosuri PTRK_0000446300 I 0.771
PTRK_0000748600 Parastrongyloides trichosuri PTRK_0000748600 I 0.836
PTRK_0001163100 Parastrongyloides trichosuri PTRK_0001163100 I 0.759
PHUM039420 Pediculus humanus PHUM039420 I 0.802
ENSPFOG00000006106 Poecilia formosa ENSPFOG00000006106 I 0.801
ENSPFOG00000006516 Poecilia formosa ENSPFOG00000006516 I 0.821
Pvit_13689 Pogona vitticeps Pvit_13689 I 0.801
scaffold296-EXSNAP2012.8 Pristionchus exspectatus scaffold296-EXSNAP2012.8 I 0.764
scaffold384-EXSNAP2012.4 Pristionchus exspectatus scaffold384-EXSNAP2012.4 I 0.753
scaffold395-EXSNAP2012.23 Pristionchus exspectatus scaffold395-EXSNAP2012.23 I 0.992
scaffold52-EXSNAP2012.30 Pristionchus exspectatus scaffold52-EXSNAP2012.30 I 0.795
scaffold572-EXSNAP2012.7 Pristionchus exspectatus scaffold572-EXSNAP2012.7 I 0.753
Ppa-nhr-120 Pristionchus pacificus PPA00183 I 0.753
Ppa-fax-1 Pristionchus pacificus PPA00264 I 0.764
PPA29597 Pristionchus pacificus PPA29597 I 0.799
NR2E3 Procavia capensis ENSPCAG00000014733 I 0.782
NR2E3 Pteropus vampyrus ENSPVAG00000009088 I 0.782
Nr2e3 Rattus norvegicus ENSRNOG00000050690 I 0.782
RSKR_0000178700 Rhabditophanes kr3021 RSKR_0000178700 I 0.801
RSKR_0000698500 Rhabditophanes kr3021 RSKR_0000698500 I 0.782
RPRC002557 Rhodnius prolixus RPRC002557 I 0.802
Sakowv30007027m.g Saccoglossus kowalevskii Sakowv30007027m.g I 0.764
Smp_167770 Schistosoma mansoni Smp_167770 I 0.768
SMRZ_0000841101 Schistosoma margrebowiei SMRZ_0000841101 I 0.768
SMTD_0001566201 Schistosoma mattheei SMTD_0001566201 I 0.768
SMU15028943 Schmidtea mediterranea SMU15028943 I 0.746
SMU15029049 Schmidtea mediterranea SMU15029049 I 0.789
SMU15038222 Schmidtea mediterranea SMU15038222 I 0.789
SBAD_0000006401 Soboliphyme baturini SBAD_0000006401 I 0.785
L596_g14199 Steinernema carpocapsae L596_g14199 I 0.851
L596_g2163 Steinernema carpocapsae L596_g2163 I 0.766
L596_g25910 Steinernema carpocapsae L596_g25910 I 0.800
L596_g702 Steinernema carpocapsae L596_g702 I 0.775
L596_g7829 Steinernema carpocapsae L596_g7829 I 0.770
L889_g11978 Steinernema feltiae L889_g11978 I 0.766
L889_g15424 Steinernema feltiae L889_g15424 I 0.765
L889_g22425 Steinernema feltiae L889_g22425 N 0.825
L889_g31970 Steinernema feltiae L889_g31970 I 0.800
L889_g8914 Steinernema feltiae L889_g8914 I 0.822
L893_g15045 Steinernema glaseri L893_g15045 I 0.793
L893_g22683 Steinernema glaseri L893_g22683 I 0.822
L893_g263 Steinernema glaseri L893_g263 I 0.800
L893_g28297 Steinernema glaseri L893_g28297 I 0.766
L893_g33656 Steinernema glaseri L893_g33656 I 0.765
L898_g11608 Steinernema monticolum L898_g11608 I 0.800
L898_g15355 Steinernema monticolum L898_g15355 I 0.766
L898_g30390 Steinernema monticolum L898_g30390 I 0.833
L898_g9613 Steinernema monticolum L898_g9613 I 0.770
L892_g2422 Steinernema scapterisci L892_g2422 I 0.851
L892_g3438 Steinernema scapterisci L892_g3438 I 0.770
L892_g5067 Steinernema scapterisci L892_g5067 I 0.775
L892_g9366 Steinernema scapterisci L892_g9366 I 0.766
SPU_014405 Strongylocentrotus purpuratus SPU_014405 I 0.767
SPAL_0000533900 Strongyloides papillosus SPAL_0000533900 I 0.787
SPAL_0001084400 Strongyloides papillosus SPAL_0001084400 I 0.759
SPAL_0001084500 Strongyloides papillosus SPAL_0001084500 I 0.759
SPAL_0001117000 Strongyloides papillosus SPAL_0001117000 I 0.789
SSTP_0000090600 Strongyloides stercoralis SSTP_0000090600 I 0.789
SSTP_0000860300 Strongyloides stercoralis SSTP_0000860300 I 0.787
SSTP_0001035300 Strongyloides stercoralis SSTP_0001035300 I 0.759
SVE_0105800 Strongyloides venezuelensis SVE_0105800 I 0.787
SVE_0933400 Strongyloides venezuelensis SVE_0933400 I 0.789
SVE_0956400 Strongyloides venezuelensis SVE_0956400 I 0.759
SVUK_0000195901 Strongylus vulgaris SVUK_0000195901 I 0.809
NR2E3 Sus scrofa ENSSSCG00000004978 I 0.772
SMUV_0000230901 Syphacia muris SMUV_0000230901 I 0.817
ENSTGUG00000004498 Taeniopygia guttata ENSTGUG00000004498 I 0.783
NR2E3 Takifugu rubripes ENSTRUG00000015582 I 0.801
TELCIR_07460 Teladorsagia circumcincta TELCIR_07460 I 0.807
tetur01g11040 Tetranychus urticae tetur01g11040 I 0.816
TCLT_0000456401 Thelazia callipaeda TCLT_0000456401 I 0.767
TCLT_0000612301 Thelazia callipaeda TCLT_0000612301 I 0.751
TCNE_0001716001 Toxocara canis TCNE_0001716001 I 0.785
TC009378 Tribolium castaneum TC009378 I 0.802
D917_05007 Trichinella nativa D917_05007 I 0.803
EFV56045 Trichinella spiralis EFV56045 I 0.803
TRE_0000223201 Trichobilharzia regenti TRE_0000223201 I 0.768
D918_07443 Trichuris suis D918_07443 I 0.787
TTRE_0000600201 Trichuris trichiura TTRE_0000600201 I 0.787
NR2E3 Tupaia belangeri ENSTBEG00000011672 I 0.790
NR2E3 Tursiops truncatus ENSTTRG00000009410 I 0.782
nr2e3 Xenopus tropicalis XB-GENE-485801 I 0.800
ENSXMAG00000010311 Xiphophorus maculatus ENSXMAG00000010311 I 0.801
ENSXMAG00000015842 Xiphophorus maculatus ENSXMAG00000015842 I 0.821
L798_02234 Zootermopsis nevadensis L798_02234 I 0.802