LotgiG196090 (Lottia gigantea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 LotgiG196090 T330947_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.474 0.667
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LotgiP196090 Sox 45 113

Links

Other Sox family TFs
Other Lottia gigantea TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI002322 Acyrthosiphon pisum ACYPI002322 I 0.415
ACYPI34316 Acyrthosiphon pisum ACYPI34316 N 0.416
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.474
ENSAMEG00000008348 Ailuropoda melanoleuca ENSAMEG00000008348 I 0.525
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I 0.453
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.474
Alligator_sinensis_CCG010545.1 Alligator sinensis Alligator_sinensis_CCG010545.1 I 0.525
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.474
ENSAPLG00000015603 Anas platyrhynchos ENSAPLG00000015603 I 0.525
HMG20A Anolis carolinensis ENSACAG00000011520 I 0.525
GB41600 Apis mellifera GB41600 I 0.581
Afo_R007008 Aptenodytes forsteri Afo_R007008 I 0.525
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.474
ENSAMXG00000013048 Astyanax mexicanus ENSAMXG00000013048 I 0.537
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.467
ACEP22292 Atta cephalotes ACEP22292 N 0.479
BGLB005856 Biomphalaria glabrata BGLB005856 N 0.438
BGLB012439 Biomphalaria glabrata BGLB012439 N 0.438
BGIBMGA005325 Bombyx mori BGIBMGA005325 I 0.489
ENSP00000336856-D1 Bos grunniens ENSP00000336856-D1 I 0.525
HMG20A Bos taurus ENSBTAG00000020441 I 0.525
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.474
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I 0.548
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I 0.548
Brh_R011859 Buceros rhinoceros Brh_R011859 I 0.525
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.474
HMG20A Callithrix jacchus ENSCJAG00000011131 I 0.525
Aan_R011684 Calypte anna Aan_R011684 I 0.474
Aan_R011791 Calypte anna Aan_R011791 I 0.525
Cflo_07151--XP_625193.1_APIME Camponotus floridanus Cflo_07151--XP_625193.1_APIME N 0.477
HMG20A Canis familiaris ENSCAFG00000018061 I 0.525
HMG20B Canis familiaris ENSCAFG00000019215 I 0.474
CapteG155070 Capitella teleta CapteG155070 I 0.587
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.474
HMG20A Cavia porcellus ENSCPOG00000011704 I 0.525
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I 0.432
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.474
Cmyd_10010094 Chelonia mydas Cmyd_10010094 I 0.525
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.474
ENSCSAG00000014734 Chlorocebus sabaeus ENSCSAG00000014734 I 0.525
HMG20A Choloepus hoffmanni ENSCHOG00000012116 I 0.525
CLEC002862 Cimex lectularius CLEC002862 I 0.544
ENSCING00000018888 Ciona intestinalis ENSCING00000018888 N 0.485
ENSCSAVG00000001086 Ciona savignyi ENSCSAVG00000001086 N 0.449
CpipJ_CPIJ004396 Culex pipiens CpipJ_CPIJ004396 N 0.418
CPIJ004396 Culex quinquefasciatus CPIJ004396 N 0.418
KGM_20768 Danaus plexippus KGM_20768 N 0.448
hmg20a Danio rerio ENSDARG00000031198 I 0.530
hmg20b Danio rerio ENSDARG00000042045 I 0.467
DAPPUDRAFT_189566 Daphnia pulex DAPPUDRAFT_189566 N 0.457
HMG20A Dasypus novemcinctus ENSDNOG00000034143 I 0.525
YQE_04289 Dendroctonus ponderosae YQE_04289 N 0.556
Hmg20a Dipodomys ordii ENSDORG00000000623 I 0.525
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.467
HMG20A Echinops telfairi ENSETEG00000015812 I 0.525
HMG20A Erinaceus europaeus ENSEEUG00000004472 I 0.525
HMG20A Felis catus ENSFCAG00000022539 I 0.525
HMG20B Felis catus ENSFCAG00000026167 I 0.474
ENSFALG00000010751 Ficedula albicollis ENSFALG00000010751 I 0.525
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.474
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I 0.465
ENSGMOG00000015452 Gadus morhua ENSGMOG00000015452 I 0.532
ENSGALG00000002746 Gallus gallus ENSGALG00000002746 I 0.525
HMG20B Gallus gallus ENSGALG00000027838 I 0.474
hmg20a Gasterosteus aculeatus ENSGACG00000003466 I 0.537
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.464
Gfo_R004366 Geospiza fortis Gfo_R004366 I 0.494
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.474
HMG20A Gorilla gorilla ENSGGOG00000008439 I 0.525
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.474
HHAL010521-PA Halyomorpha halys HHAL010521-PA I 0.547
Hsal_13222--XP_625193.1_APIME Harpegnathos saltator Hsal_13222--XP_625193.1_APIME I 0.549
HMEL017569 Heliconius melpomene HMEL017569 I 0.494
HMG20B Homo sapiens ENSG00000064961 I 0.474
HMG20A Homo sapiens ENSG00000140382 I 0.525
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I 0.431
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I 0.431
ENSSTOG00000013818 Ictidomys tridecemlineatus ENSSTOG00000013818 I 0.525
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.474
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I 0.537
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I 0.436
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I 0.437
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I 0.537
LDEC005234 Leptinotarsa decemlineata LDEC005234 N 0.469
HMG20B Loxodonta africana ENSLAFG00000007845 I 0.474
HMG20A Loxodonta africana ENSLAFG00000018273 I 0.525
ENSP00000371133 Macaca fascicularis ENSP00000371133 I 0.525
HMG20A Macaca mulatta ENSMMUG00000007430 I 0.525
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.474
ENSMEUG00000016429 Macropus eugenii ENSMEUG00000016429 I 0.525
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.474
HMG20A Meleagris gallopavo ENSMGAG00000003179 I 0.525
MCINX003064 Melitaea cinxia MCINX003064 I 0.508
HMG20A Microcebus murinus ENSMICG00000011025 I 0.525
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.474
HMG20A Monodelphis domestica ENSMODG00000012113 I 0.525
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.474
ENSMPUG00000017330 Mustela putorius furo ENSMPUG00000017330 I 0.525
Hmg20b Mus musculus ENSMUSG00000020232 D 0.474
Hmg20a Mus musculus ENSMUSG00000032329 I 0.525
Myotis_brandtii_HMG20A_10005450 Myotis brandtii Myotis_brandtii_HMG20A_10005450 I 0.525
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.474
HMG20A Myotis lucifugus ENSMLUG00000011648 I 0.525
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.474
NV11068 Nasonia vitripennis NV11068 I 0.554
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I 0.534
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I 0.490
ENSNLEG00000008357 Nomascus leucogenys ENSNLEG00000008357 I 0.525
Ocbimv22031259m.g Octopus bimaculoides Ocbimv22031259m.g I 0.695
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.464
ENSONIG00000012862 Oreochromis niloticus ENSONIG00000012862 I 0.537
HMG20A Ornithorhynchus anatinus ENSOANG00000009993 I 0.525
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.474
HMG20A Oryctolagus cuniculus ENSOCUG00000005648 I 0.525
hmg20a Oryzias latipes ENSORLG00000001794 I 0.537
hmg20b Oryzias latipes ENSORLG00000004640 I 0.464
HMG20A Otolemur garnettii ENSOGAG00000006630 I 0.525
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.474
ENSOARG00000001765 Ovis aries ENSOARG00000001765 I 0.525
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I 0.453
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.474
HMG20A Pan troglodytes ENSPTRG00000007326 I 0.525
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.474
ENSPANG00000015844 Papio anubis ENSPANG00000015844 I 0.525
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.474
ENSPSIG00000013006 Pelodiscus sinensis ENSPSIG00000013006 I 0.525
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.464
ENSPFOG00000014087 Poecilia formosa ENSPFOG00000014087 I 0.537
Pvit_01997 Pogona vitticeps Pvit_01997 I 0.525
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.474
ENSPPYG00000006683 Pongo abelii ENSPPYG00000006683 I 0.525
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.474
HMG20B Procavia capensis ENSPCAG00000010772 I 0.474
HMG20A Procavia capensis ENSPCAG00000013879 I 0.525
Hmg20a Rattus norvegicus ENSRNOG00000016905 I 0.525
Hmg20b Rattus norvegicus ENSRNOG00000020601 I 0.474
RPRC008043 Rhodnius prolixus RPRC008043 I 0.507
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I 0.535
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.474
ENSSHAG00000012311 Sarcophilus harrisii ENSSHAG00000012311 I 0.525
SINV20852 Solenopsis invicta SINV20852 N 0.472
HMG20A Sorex araneus ENSSARG00000012609 I 0.485
SMAR002604 Strigamia maritima SMAR002604 I 0.466
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I 0.547
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I 0.547
HMG20A Sus scrofa ENSSSCG00000001871 I 0.525
ENSSSCG00000024002 Sus scrofa ENSSSCG00000024002 I 0.525
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.474
HMG20A Taeniopygia guttata ENSTGUG00000003690 I 0.525
hmg20a Takifugu rubripes ENSTRUG00000016127 I 0.537
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.464
ENSTSYG00000003485 Tarsius syrichta ENSTSYG00000003485 I 0.525
hmg20a Tetraodon nigroviridis ENSTNIG00000008460 I 0.537
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I 0.464
TC009230 Tribolium castaneum TC009230 N 0.466
TriadG23407 Trichoplax adhaerens TriadG23407 I 0.535
HMG20A Tupaia belangeri ENSTBEG00000015283 I 0.525
HMG20A Tursiops truncatus ENSTTRG00000006500 I 0.525
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.474
Tal_R006697 Tyto alba Tal_R006697 I 0.525
HMG20A Vicugna pacos ENSVPAG00000010013 I 0.525
hmg20b.S Xenopus laevis XB-GENE-17338323 I 0.467
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.467
hmg20a.L Xenopus laevis XB-GENE-955359 I 0.503
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.467
hmg20a Xenopus tropicalis XB-GENE-955353 I 0.503
ENSXMAG00000000587 Xiphophorus maculatus ENSXMAG00000000587 I 0.537
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.464
L798_15457 Zootermopsis nevadensis L798_15457 I 0.547