Phatr3_J38097 (Phaeodactylum tricornutum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Phatr3_J38097 T331913_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Phatr3_J38097.p1 Sox 75 100
Phatr3_J38097.p1 Sox 105 162

Links

Other Sox family TFs
Other Phaeodactylum tricornutum TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
UCREL1_5722 Eutypa lata UCREL1_5722 N 0.439
fgenesh2_pg.9_#_353 Fragilariopsis cylindrus fgenesh2_pg.9_#_353 N 0.565
fgenesh2_pg.7_#_214 Fragilariopsis cylindrus fgenesh2_pg.7_#_214 N 0.453
fgenesh2_pg.4_#_1036 Fragilariopsis cylindrus fgenesh2_pg.4_#_1036 N 0.417
estExt_Genewise1Plus.C_70298 Fragilariopsis cylindrus estExt_Genewise1Plus.C_70298 N 0.481
estExt_fgenesh2_kg.C_130080 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_130080 N 0.479
PAS_chr1-1_0442 Komagataella pastoris PAS_chr1-1_0442 N 0.444
MCOS_0000664501 Mesocestoides corti MCOS_0000664501 N 0.418
MAM_05902 Metarhizium album MAM_05902 N 0.480
NCLIV_023590 Neospora caninum NCLIV_023590 N 0.426
Phatr3_J50240 Phaeodactylum tricornutum Phatr3_J50240 N 0.500
Phatr3_J33840 Phaeodactylum tricornutum Phatr3_J33840 N 0.486
Phatr3_J39045 Phaeodactylum tricornutum Phatr3_J39045 N 0.464
Phatr3_J42576 Phaeodactylum tricornutum Phatr3_J42576 N 0.467
Phatr3_J47350 Phaeodactylum tricornutum Phatr3_J47350 N 0.579
Phatr3_J49506 Phaeodactylum tricornutum Phatr3_J49506 N 0.474
Phatr3_J49937 Phaeodactylum tricornutum Phatr3_J49937 N 0.447
Phatr3_J49938 Phaeodactylum tricornutum Phatr3_J49938 N 0.488
Phatr3_J50336 Phaeodactylum tricornutum Phatr3_J50336 N 0.428
XP_002490100.1 Pichia pastoris XP_002490100.1 N 0.444
S40285_05706 Stachybotrys chlorohalonata S40285_05706 N 0.518
Thaps22889 Thalassiosira pseudonana Thaps22889 N 0.495
Thaps10099 Thalassiosira pseudonana Thaps10099 N 0.480
Thaps11168 Thalassiosira pseudonana Thaps11168 N 0.491
Thaps12024 Thalassiosira pseudonana Thaps12024 N 0.488
Thaps22372 Thalassiosira pseudonana Thaps22372 N 0.463
Thaps23446 Thalassiosira pseudonana Thaps23446 N 0.433
Thapsdraft651 Thalassiosira pseudonana Thapsdraft651 N 0.519
Thapsdraft1840 Thalassiosira pseudonana Thapsdraft1840 N 0.465
Thaps5285 Thalassiosira pseudonana Thaps5285 N 0.481
Thaps4076 Thalassiosira pseudonana Thaps4076 N 0.498
Thaps4075 Thalassiosira pseudonana Thaps4075 N 0.498
Thaps25909 Thalassiosira pseudonana Thaps25909 N 0.486
Thaps24954 Thalassiosira pseudonana Thaps24954 N 0.480
Thaps24755 Thalassiosira pseudonana Thaps24755 N 0.428