MTR_4g108370 (Medicago truncatula)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 MTR_4g108370 T344041_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.976 0.553
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.976 0.553
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.976 0.553
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.976 0.553
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.974 0.647
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.972 0.547
TCP8
M01311_2.00 		Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN		 PBM
Lambert et al.(2019)
pTH11569 		0.964 0.513
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.962 0.407
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.959 0.447
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.959 0.440
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.959 0.473
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.959 0.473
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.958 0.407
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.958 0.407
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.958 0.407
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.957 0.413
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.956 0.400
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.955 0.413
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.955 0.413
TCP23
M00891_2.00 		Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP23 		0.955 0.480
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.954 0.407
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.954 0.400
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.953 0.400
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.953 0.393
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.953 0.393
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.953 0.393
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.953 0.393
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.951 0.427
TCP7
M07294_2.00 		Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY		 Dap-seq
OMalley et al.(2016)
TCP7_col_a 		0.946 0.407
TCP21
M07292_2.00 		Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN		 Dap-seq
OMalley et al.(2016)
At5g08330_col_a 		0.945 0.387
TCP21
M07293_2.00 		Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a 		0.945 0.387
OS02G0635800
M02512_2.00 		Oryza sativa
NBGGGCCCVN
NBGGGCCCVN		 PBM
Weirauch et al.(2014)
pTH8856 		0.943 0.367
OsI_08196
M02513_2.00 		Oryza sativa
GGGCCCAC
GTGGGCCC		 PBM
Weirauch et al.(2014)
pTH9274 		0.942 0.367
TCP11
M11395_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_01 		0.896 0.420
TCP11
M11396_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_02 		0.896 0.420
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES91250 TCP 95 284

Links

Other TCP family TFs
Other Medicago truncatula TFs

657 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI002322 Acyrthosiphon pisum ACYPI002322 I
ACYPI34316 Acyrthosiphon pisum ACYPI34316 N
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I
ENSAMEG00000008348 Ailuropoda melanoleuca ENSAMEG00000008348 I
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I
Alligator_sinensis_CCG010545.1 Alligator sinensis Alligator_sinensis_CCG010545.1 I
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I
ENSAPLG00000015603 Anas platyrhynchos ENSAPLG00000015603 I
HMG20A Anolis carolinensis ENSACAG00000011520 I
GB41600 Apis mellifera GB41600 I
Afo_R007008 Aptenodytes forsteri Afo_R007008 I
Afo_R007636 Aptenodytes forsteri Afo_R007636 I
ENSAMXG00000013048 Astyanax mexicanus ENSAMXG00000013048 I
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I
ACEP22292 Atta cephalotes ACEP22292 N
BGLB005856 Biomphalaria glabrata BGLB005856 N
BGLB012439 Biomphalaria glabrata BGLB012439 N
BGIBMGA005325 Bombyx mori BGIBMGA005325 I
ENSP00000336856-D1 Bos grunniens ENSP00000336856-D1 I
HMG20A Bos taurus ENSBTAG00000020441 I
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I
Brh_R011859 Buceros rhinoceros Brh_R011859 I
HMG20B Callithrix jacchus ENSCJAG00000003488 I
HMG20A Callithrix jacchus ENSCJAG00000011131 I
Aan_R011684 Calypte anna Aan_R011684 I
Aan_R011791 Calypte anna Aan_R011791 I
Cflo_07151--XP_625193.1_APIME Camponotus floridanus Cflo_07151--XP_625193.1_APIME N
HMG20A Canis familiaris ENSCAFG00000018061 I
HMG20B Canis familiaris ENSCAFG00000019215 I
CapteG155070 Capitella teleta CapteG155070 I
HMG20B Cavia porcellus ENSCPOG00000010777 I
HMG20A Cavia porcellus ENSCPOG00000011704 I
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I
Cmyd_10010094 Chelonia mydas Cmyd_10010094 I
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I
ENSCSAG00000014734 Chlorocebus sabaeus ENSCSAG00000014734 I
HMG20A Choloepus hoffmanni ENSCHOG00000012116 I
CLEC002862 Cimex lectularius CLEC002862 I
ENSCING00000018888 Ciona intestinalis ENSCING00000018888 N
ENSCSAVG00000001086 Ciona savignyi ENSCSAVG00000001086 N
CpipJ_CPIJ004396 Culex pipiens CpipJ_CPIJ004396 N
CPIJ004396 Culex quinquefasciatus CPIJ004396 N
KGM_20768 Danaus plexippus KGM_20768 N
hmg20a Danio rerio ENSDARG00000031198 I
hmg20b Danio rerio ENSDARG00000042045 I
DAPPUDRAFT_189566 Daphnia pulex DAPPUDRAFT_189566 N
HMG20A Dasypus novemcinctus ENSDNOG00000034143 I
YQE_04289 Dendroctonus ponderosae YQE_04289 N
Hmg20a Dipodomys ordii ENSDORG00000000623 I
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I
HMG20A Echinops telfairi ENSETEG00000015812 I
HMG20A Erinaceus europaeus ENSEEUG00000004472 I
HMG20A Felis catus ENSFCAG00000022539 I
HMG20B Felis catus ENSFCAG00000026167 I
ENSFALG00000010751 Ficedula albicollis ENSFALG00000010751 I
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I
ENSGMOG00000015452 Gadus morhua ENSGMOG00000015452 I
ENSGALG00000002746 Gallus gallus ENSGALG00000002746 I
HMG20B Gallus gallus ENSGALG00000027838 I
hmg20a Gasterosteus aculeatus ENSGACG00000003466 I
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I
Gfo_R004366 Geospiza fortis Gfo_R004366 I
Gfo_R007604 Geospiza fortis Gfo_R007604 I
HMG20A Gorilla gorilla ENSGGOG00000008439 I
HMG20B Gorilla gorilla ENSGGOG00000014805 I
HHAL010521-PA Halyomorpha halys HHAL010521-PA I
Hsal_13222--XP_625193.1_APIME Harpegnathos saltator Hsal_13222--XP_625193.1_APIME I
HMEL017569 Heliconius melpomene HMEL017569 I
HMG20B Homo sapiens ENSG00000064961 I
HMG20A Homo sapiens ENSG00000140382 I
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I
ENSSTOG00000013818 Ictidomys tridecemlineatus ENSSTOG00000013818 I
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I
LDEC005234 Leptinotarsa decemlineata LDEC005234 N
HMG20B Loxodonta africana ENSLAFG00000007845 I
HMG20A Loxodonta africana ENSLAFG00000018273 I
ENSP00000371133 Macaca fascicularis ENSP00000371133 I
HMG20A Macaca mulatta ENSMMUG00000007430 I
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I
ENSMEUG00000016429 Macropus eugenii ENSMEUG00000016429 I
HMG20B Meleagris gallopavo ENSMGAG00000001362 I
HMG20A Meleagris gallopavo ENSMGAG00000003179 I
MCINX003064 Melitaea cinxia MCINX003064 I
HMG20A Microcebus murinus ENSMICG00000011025 I
HMG20B Monodelphis domestica ENSMODG00000006884 I
HMG20A Monodelphis domestica ENSMODG00000012113 I
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I
ENSMPUG00000017330 Mustela putorius furo ENSMPUG00000017330 I
Hmg20b Mus musculus ENSMUSG00000020232 D
Hmg20a Mus musculus ENSMUSG00000032329 I
Myotis_brandtii_HMG20A_10005450 Myotis brandtii Myotis_brandtii_HMG20A_10005450 I
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I
HMG20A Myotis lucifugus ENSMLUG00000011648 I
HMG20B Myotis lucifugus ENSMLUG00000022392 I
NV11068 Nasonia vitripennis NV11068 I
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I
ENSNLEG00000008357 Nomascus leucogenys ENSNLEG00000008357 I
Ocbimv22031259m.g Octopus bimaculoides Ocbimv22031259m.g I
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I
ENSONIG00000012862 Oreochromis niloticus ENSONIG00000012862 I
HMG20A Ornithorhynchus anatinus ENSOANG00000009993 I
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I
HMG20A Oryctolagus cuniculus ENSOCUG00000005648 I
hmg20a Oryzias latipes ENSORLG00000001794 I
hmg20b Oryzias latipes ENSORLG00000004640 I
HMG20A Otolemur garnettii ENSOGAG00000006630 I
HMG20B Otolemur garnettii ENSOGAG00000014171 I
ENSOARG00000001765 Ovis aries ENSOARG00000001765 I
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I
HMG20A Pan troglodytes ENSPTRG00000007326 I
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I
ENSPANG00000015844 Papio anubis ENSPANG00000015844 I
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I
ENSPSIG00000013006 Pelodiscus sinensis ENSPSIG00000013006 I
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I
ENSPFOG00000014087 Poecilia formosa ENSPFOG00000014087 I
Pvit_01997 Pogona vitticeps Pvit_01997 I
Pvit_08123 Pogona vitticeps Pvit_08123 I
ENSPPYG00000006683 Pongo abelii ENSPPYG00000006683 I
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I
HMG20B Procavia capensis ENSPCAG00000010772 I
HMG20A Procavia capensis ENSPCAG00000013879 I
Hmg20a Rattus norvegicus ENSRNOG00000016905 I
Hmg20b Rattus norvegicus ENSRNOG00000020601 I
RPRC008043 Rhodnius prolixus RPRC008043 I
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I
ENSSHAG00000012311 Sarcophilus harrisii ENSSHAG00000012311 I
SINV20852 Solenopsis invicta SINV20852 N
HMG20A Sorex araneus ENSSARG00000012609 I
SMAR002604 Strigamia maritima SMAR002604 I
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I
HMG20A Sus scrofa ENSSSCG00000001871 I
ENSSSCG00000024002 Sus scrofa ENSSSCG00000024002 I
HMG20B Taeniopygia guttata ENSTGUG00000000169 I
HMG20A Taeniopygia guttata ENSTGUG00000003690 I
hmg20a Takifugu rubripes ENSTRUG00000016127 I
eef2l2 Takifugu rubripes ENSTRUG00000017921 I
ENSTSYG00000003485 Tarsius syrichta ENSTSYG00000003485 I
hmg20a Tetraodon nigroviridis ENSTNIG00000008460 I
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I
TC009230 Tribolium castaneum TC009230 N
TriadG23407 Trichoplax adhaerens TriadG23407 I
HMG20A Tupaia belangeri ENSTBEG00000015283 I
HMG20A Tursiops truncatus ENSTTRG00000006500 I
HMG20B Tursiops truncatus ENSTTRG00000008832 I
Tal_R006697 Tyto alba Tal_R006697 I
HMG20A Vicugna pacos ENSVPAG00000010013 I
hmg20b.S Xenopus laevis XB-GENE-17338323 I
hmg20b.L Xenopus laevis XB-GENE-5809135 I
hmg20a.L Xenopus laevis XB-GENE-955359 I
hmg20b Xenopus tropicalis XB-GENE-5809048 I
hmg20a Xenopus tropicalis XB-GENE-955353 I
ENSXMAG00000000587 Xiphophorus maculatus ENSXMAG00000000587 I
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I
L798_15457 Zootermopsis nevadensis L798_15457 I