CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0002s15560
(
Populus trichocarpa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
POPTR_0002s15560
T295222_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC69
M07216_2.00
Arabidopsis thaliana
WMCTTVTNNNNYAAG
CTTRNNNNABAAGKW
Dap-seq
OMalley et al.(2016)
NTM2_col_b
0.905
0.539
NAC002
M00970_2.00
Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN
PBM
Lindemose et al.(2014)
ATAF1
0.879
0.504
NAC002
M07159_2.00
Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM
Dap-seq
OMalley et al.(2016)
ATAF1_col_a
0.879
0.504
NAC002
M07160_2.00
Arabidopsis thaliana
YACGY
RCGTR
Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a
0.879
0.504
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0002s15560.1
NAC/NAM
12
141
PVGYGFHPTDEELVNHFLKLKMIGGYDHVVSTIAEVNVCNYEPWELPGLSAIQSNDPECYFFSRPNYKYSKSQRANRTTGAGYWKGTGRDRTITAKSTGEQIATKKTLVFYNGRVPNGVRTNWIMHEYNP
Links
Other
NAC/NAM
family TFs
Other
Populus trichocarpa
TFs
147 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0024s0340
Salix purpurea
SapurV1A.0024s0340
I
0.984
POPTR_0014s07210
Populus trichocarpa
POPTR_0014s07210
I
0.977
POPTR_0002s18290
Populus trichocarpa
POPTR_0002s18290
I
0.976
SapurV1A.0162s0450
Salix purpurea
SapurV1A.0162s0450
I
0.976
POPTR_0014s10330
Populus trichocarpa
POPTR_0014s10330
I
0.974
POPTR_0014s10360
Populus trichocarpa
POPTR_0014s10360
I
0.973
POPTR_0014s10350
Populus trichocarpa
POPTR_0014s10350
I
0.973
SapurV1A.0321s0350
Salix purpurea
SapurV1A.0321s0350
I
0.972
POPTR_0002s18310
Populus trichocarpa
POPTR_0002s18310
I
0.970
SapurV1A.0321s0340
Salix purpurea
SapurV1A.0321s0340
I
0.968
SapurV1A.0586s0170
Salix purpurea
SapurV1A.0586s0170
I
0.968
SapurV1A.0321s0360
Salix purpurea
SapurV1A.0321s0360
I
0.968
Solyc03g080090.2
Solanum lycopersicum
Solyc03g080090.2
I
0.942
PGSC0003DMG400000555
Solanum tuberosum
PGSC0003DMG400000555
I
0.936
MDP0000575835
Malus domestica
MDP0000575835
I
0.925
Eucgr.G01548
Eucalyptus grandis
Eucgr.G01548
N
0.924
Eucgr.G01067
Eucalyptus grandis
Eucgr.G01067
N
0.921
mgf022344m
Mimulus guttatus
mgf022344m
I
0.916
Pm019659
Prunus mume
Pm019659
I
0.915
Sb07g003900
Sorghum bicolor
Sb07g003900
I
0.914
Carubv10003260m.g
Capsella rubella
Carubv10003260m.g
I
0.914
AMTR_s00018p00071850
Amborella trichopoda
AMTR_s00018p00071850
I
0.913
Bostr.5325s0009
Boechera stricta
Bostr.5325s0009
I
0.911
cassava39379.m1
Manihot esculenta
cassava39379.m1
N
0.909
GRMZM2G003715
Zea mays
GRMZM2G003715
I
0.909
MTR_5g069030
Medicago truncatula
MTR_5g069030
I
0.908
Eucgr.G01066
Eucalyptus grandis
Eucgr.G01066
N
0.908
VIT_15s0048g02300
Vitis vinifera
VIT_15s0048g02300
N
0.908
Bo9g004070
Brassica oleracea
Bo9g004070
I
0.906
SapurV1A.0003s0330
Salix purpurea
SapurV1A.0003s0330
I
0.905
MTR_8g023840
Medicago truncatula
MTR_8g023840
I
0.905
MDP0000214515
Malus domestica
MDP0000214515
I
0.905
NAC69
Arabidopsis thaliana
AT4G01550
D
0.905
anac069
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002854
I
0.905
GSMUA_Achr3G00330_001
Musa acuminata
GSMUA_Achr3G00330_001
I
0.904
GSMUA_Achr11G07800_001
Musa acuminata
GSMUA_Achr11G07800_001
N
0.903
MDP0000231843
Malus domestica
MDP0000231843
I
0.902
Ca_27204
Cicer arietinum
Ca_27204
I
0.901
MLOC_50406
Hordeum vulgare
MLOC_50406
I
0.901
TRIUR3_32613
Triticum urartu
TRIUR3_32613
I
0.901
Traes_7DL_AB67A0B36
Triticum aestivum
Traes_7DL_AB67A0B36
I
0.901
Traes_7AL_669D4AE47
Triticum aestivum
Traes_7AL_669D4AE47
I
0.901
F775_30082
Aegilops tauschii
F775_30082
I
0.901
Traes_7BL_0C386426A
Triticum aestivum
Traes_7BL_0C386426A
I
0.901
Thhalv10028684m.g
Eutrema salsugineum
Thhalv10028684m.g
I
0.900
Bra036328
Brassica rapa
Bra036328
I
0.900
ORGLA08G0029000
Oryza glaberrima
ORGLA08G0029000
I
0.899
OS08G0157900
Oryza sativa
OS08G0157900
I
0.899
ORUFI08G03870
Oryza rufipogon
ORUFI08G03870
I
0.899
OPUNC08G03310
Oryza punctata
OPUNC08G03310
I
0.899
BGIOSGA027623
Oryza indica
BGIOSGA027623
I
0.899
OBART08G03460
Oryza barthii
OBART08G03460
I
0.899
OB08G13730
Oryza brachyantha
OB08G13730
I
0.899
Bostr.4825s0023
Boechera stricta
Bostr.4825s0023
I
0.899
Bostr.5325s0019
Boechera stricta
Bostr.5325s0019
I
0.899
OLONG_000105
Oryza longistaminata
OLONG_000105
I
0.899
OGLUM08G03540
Oryza glumaepatula
OGLUM08G03540
I
0.899
OMERI08G03500
Oryza meridionalis
OMERI08G03500
I
0.899
Gorai.004G125900
Gossypium raimondii
Gorai.004G125900
I
0.899
Ca_20988
Cicer arietinum
Ca_20988
I
0.899
ONIVA08G03440
Oryza nivara
ONIVA08G03440
I
0.899
Bra027596
Brassica rapa
Bra027596
I
0.898
Thhalv10007665m.g
Eutrema salsugineum
Thhalv10007665m.g
I
0.897
Si013369m.g
Setaria italica
Si013369m.g
I
0.897
BRADI4G37327
Brachypodium distachyon
BRADI4G37327
I
0.897
Pavir.Fa01901
Panicum virgatum
Pavir.Fa01901
I
0.896
GLYMA14G36840
Glycine max
GLYMA14G36840
I
0.895
BRADI3G16480
Brachypodium distachyon
BRADI3G16480
I
0.895
VIT_15s0048g02320
Vitis vinifera
VIT_15s0048g02320
I
0.893
Solyc06g073050.2
Solanum lycopersicum
Solyc06g073050.2
N
0.893
Lus10005143.g
Linum usitatissimum
Lus10005143.g
N
0.893
Lus10030175.g
Linum usitatissimum
Lus10030175.g
N
0.893
Bra008553
Brassica rapa
Bra008553
I
0.892
MTR_8g023860
Medicago truncatula
MTR_8g023860
I
0.892
MTR_8g023930
Medicago truncatula
MTR_8g023930
I
0.892
Pavir.Ea03621
Panicum virgatum
Pavir.Ea03621
I
0.892
Eucgr.G01550
Eucalyptus grandis
Eucgr.G01550
N
0.891
ANAC001
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1000119
I
0.891
ATAF1
Arabidopsis lyrata
scaffold_100066.1
I
0.890
Aquca_014_00255
Aquilegia coerulea
Aquca_014_00255
I
0.890
Thhalv10012158m.g
Eutrema salsugineum
Thhalv10012158m.g
I
0.889
mgf013201m
Mimulus guttatus
mgf013201m
I
0.889
Pavir.Fb00405
Panicum virgatum
Pavir.Fb00405
I
0.889
LPERR08G03510
Leersia perrieri
LPERR08G03510
I
0.889
PRUPE_ppa022384mg
Prunus persica
PRUPE_ppa022384mg
I
0.889
Bo00853s060
Brassica oleracea
Bo00853s060
I
0.888
Cagra.1968s0045
Capsella grandiflora
Cagra.1968s0045
I
0.888
MDP0000282616
Malus domestica
MDP0000282616
I
0.888
Carubv10009049m.g
Capsella rubella
Carubv10009049m.g
I
0.888
F775_13961
Aegilops tauschii
F775_13961
I
0.887
Aquca_009_00966
Aquilegia coerulea
Aquca_009_00966
I
0.885
Gorai.006G203800
Gossypium raimondii
Gorai.006G203800
I
0.885
POPTR_0002s18320
Populus trichocarpa
POPTR_0002s18320
I
0.884
PRUPE_ppa017765mg
Prunus persica
PRUPE_ppa017765mg
I
0.884
TCM_015535
Theobroma cacao
TCM_015535
I
0.884
MLOC_13932
Hordeum vulgare
MLOC_13932
I
0.884
Bra033296
Brassica rapa
Bra033296
I
0.884
Lus10032919.g
Linum usitatissimum
Lus10032919.g
I
0.883
evm.TU.contig_29561
Carica papaya
evm.TU.contig_29561
I
0.883
MDP0000311190
Malus domestica
MDP0000311190
I
0.883
Lus10015587.g
Linum usitatissimum
Lus10015587.g
I
0.883
gene18589-v1.0-hybrid
Fragaria vesca
gene18589-v1.0-hybrid
N
0.882
Eucgr.K02303
Eucalyptus grandis
Eucgr.K02303
I
0.882
MLOC_37843
Hordeum vulgare
MLOC_37843
I
0.881
Traes_5BL_8BE382FE3
Triticum aestivum
Traes_5BL_8BE382FE3
I
0.881
TRIUR3_13805
Triticum urartu
TRIUR3_13805
I
0.881
GSMUA_AchrUn_randomG04060_001
Musa acuminata
GSMUA_AchrUn_randomG04060_001
I
0.881
Traes_5DL_B69423A67
Triticum aestivum
Traes_5DL_B69423A67
I
0.881
Si032702m.g
Setaria italica
Si032702m.g
I
0.880
ONIVA08G22710
Oryza nivara
ONIVA08G22710
I
0.880
OPUNC08G18240
Oryza punctata
OPUNC08G18240
I
0.880
BGIOSGA026695
Oryza indica
BGIOSGA026695
I
0.880
OS08G0511200
Oryza sativa
OS08G0511200
I
0.879
ORUFI08G22550
Oryza rufipogon
ORUFI08G22550
I
0.879
Cagra.1968s0112
Capsella grandiflora
Cagra.1968s0112
I
0.879
ORGLA08G0177600
Oryza glaberrima
ORGLA08G0177600
I
0.879
Bra033239
Brassica rapa
Bra033239
I
0.879
Bo5g001100
Brassica oleracea
Bo5g001100
I
0.879
NAC002
Arabidopsis thaliana
AT1G01720
D
0.879
Carubv10009926m.g
Capsella rubella
Carubv10009926m.g
I
0.879
Bostr.5325s0094
Boechera stricta
Bostr.5325s0094
I
0.879
OGLUM08G21360
Oryza glumaepatula
OGLUM08G21360
I
0.879
LPERR08G17020
Leersia perrieri
LPERR08G17020
I
0.878
Sb02g032230
Sorghum bicolor
Sb02g032230
I
0.878
LPERR09G14720
Leersia perrieri
LPERR09G14720
I
0.878
Bostr.5325s0008
Boechera stricta
Bostr.5325s0008
I
0.877
OB09G25590
Oryza brachyantha
OB09G25590
I
0.876
OGLUM09G19480
Oryza glumaepatula
OGLUM09G19480
I
0.876
ORGLA09G0151800
Oryza glaberrima
ORGLA09G0151800
I
0.876
chr1.LjT41E18.160.nc
Lotus japonicus
chr1.LjT41E18.160.nc
I
0.876
OMERI09G14170
Oryza meridionalis
OMERI09G14170
I
0.876
BGIOSGA031230
Oryza indica
BGIOSGA031230
I
0.876
ONIVA09G20130
Oryza nivara
ONIVA09G20130
I
0.876
SapurV1A.0093s0260
Salix purpurea
SapurV1A.0093s0260
I
0.875
orange1.1g016435m.g
Citrus sinensis
orange1.1g016435m.g
N
0.875
Bostr.5325s0018
Boechera stricta
Bostr.5325s0018
I
0.875
Pavir.Ba01386
Panicum virgatum
Pavir.Ba01386
I
0.875
Pavir.Bb02626
Panicum virgatum
Pavir.Bb02626
I
0.875
SapurV1A.0740s0040
Salix purpurea
SapurV1A.0740s0040
I
0.874
cassava28909.valid.m1
Manihot esculenta
cassava28909.valid.m1
I
0.874
SapurV1A.3767s0010
Salix purpurea
SapurV1A.3767s0010
I
0.874
GLYMA14G24220
Glycine max
GLYMA14G24220
I
0.874
Solyc04g009440.2
Solanum lycopersicum
Solyc04g009440.2
I
0.873
MTR_3g093050
Medicago truncatula
MTR_3g093050
I
0.872
AMTR_s00022p00160350
Amborella trichopoda
AMTR_s00022p00160350
I
0.871
Gorai.005G088800
Gossypium raimondii
Gorai.005G088800
I
0.871
Ca_04069
Cicer arietinum
Ca_04069
I
0.871