OB02G40920 (Oryza brachyantha)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 OB02G40920 T331550_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
OB02G40920.1 Sox 164 208

Links

Other Sox family TFs
Other Oryza brachyantha TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OS02G0770600 Oryza sativa OS02G0770600 N 0.735
ORGLA02G0294700 Oryza glaberrima ORGLA02G0294700 N 0.735
OPUNC02G31450 Oryza punctata OPUNC02G31450 N 0.735
OMERI02G32400 Oryza meridionalis OMERI02G32400 I 0.735
Pavir.J01310 Panicum virgatum Pavir.J01310 N 0.735
BGIOSGA009119 Oryza indica BGIOSGA009119 N 0.735
Pavir.Aa00349 Panicum virgatum Pavir.Aa00349 N 0.735
Si017699m.g Setaria italica Si017699m.g N 0.735
OLONG_015646 Oryza longistaminata OLONG_015646 N 0.735
ONIVA02G36110 Oryza nivara ONIVA02G36110 I 0.735
OGLUM02G35200 Oryza glumaepatula OGLUM02G35200 I 0.735
OBART02G34050 Oryza barthii OBART02G34050 N 0.735
LPERR02G27910 Leersia perrieri LPERR02G27910 N 0.735
ORUFI02G35580 Oryza rufipogon ORUFI02G35580 I 0.735
OB07G29110 Oryza brachyantha OB07G29110 N 0.735
mgf000387m Mimulus guttatus mgf000387m N 0.691
mgf013454m Mimulus guttatus mgf013454m N 0.691
POPTR_0003s01620 Populus trichocarpa POPTR_0003s01620 N 0.677
SapurV1A.0647s0030 Salix purpurea SapurV1A.0647s0030 N 0.673
orange1.1g017878m.g Citrus sinensis orange1.1g017878m.g N 0.673
Ciclev10001601m.g Citrus clementina Ciclev10001601m.g N 0.673
BRADI3G57700 Brachypodium distachyon BRADI3G57700 N 0.661
Traes_6DL_647FC758E1 Triticum aestivum Traes_6DL_647FC758E1 N 0.657
F775_20121 Aegilops tauschii F775_20121 N 0.657
TRIUR3_20834 Triticum urartu TRIUR3_20834 N 0.657
MLOC_54605 Hordeum vulgare MLOC_54605 N 0.657
Aquca_014_00165 Aquilegia coerulea Aquca_014_00165 N 0.651
30116.m000393 Ricinus communis 30116.m000393 N 0.647
Ciclev10001827m.g Citrus clementina Ciclev10001827m.g N 0.644
orange1.1g020440m.g Citrus sinensis orange1.1g020440m.g N 0.644
PGSC0003DMG400023744 Solanum tuberosum PGSC0003DMG400023744 N 0.640
Gorai.005G260200 Gossypium raimondii Gorai.005G260200 N 0.630
GSMUA_Achr2G01240_001 Musa acuminata GSMUA_Achr2G01240_001 N 0.628
gene11787-v1.0-hybrid Fragaria vesca gene11787-v1.0-hybrid N 0.617
POPTR_0001s21610 Populus trichocarpa POPTR_0001s21610 N 0.616
SapurV1A.0869s0080 Salix purpurea SapurV1A.0869s0080 N 0.616
PGSC0003DMG400026151 Solanum tuberosum PGSC0003DMG400026151 N 0.615
PRUPE_ppa007591mg Prunus persica PRUPE_ppa007591mg N 0.610
evm.TU.supercontig_49.134 Carica papaya evm.TU.supercontig_49.134 N 0.604
Cla002005 Citrullus lanatus Cla002005 N 0.598
PK04394.1 Cannabis sativa PK04394.1 N 0.598
PK16821.1 Cannabis sativa PK16821.1 N 0.598
Cucsa.239250 Cucumis sativus Cucsa.239250 N 0.598
VIT_12s0034g00960 Vitis vinifera VIT_12s0034g00960 N 0.586
VIT_18s0001g03950 Vitis vinifera VIT_18s0001g03950 N 0.580
MDP0000597087 Malus domestica MDP0000597087 N 0.577
TCM_006422 Theobroma cacao TCM_006422 N 0.570
cassava19406.valid.m1 Manihot esculenta cassava19406.valid.m1 N 0.557
MDP0000634922 Malus domestica MDP0000634922 N 0.543
GSMUA_Achr8G18160_001 Musa acuminata GSMUA_Achr8G18160_001 N 0.537
evm.TU.supercontig_49.133 Carica papaya evm.TU.supercontig_49.133 N 0.536
Thhalv10028879m.g Eutrema salsugineum Thhalv10028879m.g N 0.522