orange1.1g020440m.g (Citrus sinensis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 orange1.1g020440m.g T334634_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g020413m Sox 167 212
orange1.1g020440m Sox 167 212

Links

Other Sox family TFs
Other Citrus sinensis TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10001827m.g Citrus clementina Ciclev10001827m.g N 0.741
Aquca_014_00165 Aquilegia coerulea Aquca_014_00165 N 0.710
Traes_6DL_647FC758E1 Triticum aestivum Traes_6DL_647FC758E1 N 0.687
TRIUR3_20834 Triticum urartu TRIUR3_20834 N 0.687
MLOC_54605 Hordeum vulgare MLOC_54605 N 0.687
mgf013454m Mimulus guttatus mgf013454m N 0.687
F775_20121 Aegilops tauschii F775_20121 N 0.687
mgf000387m Mimulus guttatus mgf000387m N 0.687
POPTR_0003s01620 Populus trichocarpa POPTR_0003s01620 N 0.683
evm.TU.supercontig_49.134 Carica papaya evm.TU.supercontig_49.134 N 0.677
PK04394.1 Cannabis sativa PK04394.1 N 0.677
gene11787-v1.0-hybrid Fragaria vesca gene11787-v1.0-hybrid N 0.676
Ciclev10001601m.g Citrus clementina Ciclev10001601m.g N 0.666
orange1.1g017878m.g Citrus sinensis orange1.1g017878m.g N 0.666
SapurV1A.0647s0030 Salix purpurea SapurV1A.0647s0030 N 0.666
OB07G29110 Oryza brachyantha OB07G29110 N 0.650
BGIOSGA009119 Oryza indica BGIOSGA009119 N 0.650
MDP0000597087 Malus domestica MDP0000597087 N 0.650
LPERR02G27910 Leersia perrieri LPERR02G27910 N 0.650
ONIVA02G36110 Oryza nivara ONIVA02G36110 I 0.650
ORUFI02G35580 Oryza rufipogon ORUFI02G35580 I 0.650
OGLUM02G35200 Oryza glumaepatula OGLUM02G35200 I 0.650
OMERI02G32400 Oryza meridionalis OMERI02G32400 I 0.650
OBART02G34050 Oryza barthii OBART02G34050 N 0.650
Si017699m.g Setaria italica Si017699m.g N 0.650
Pavir.J01310 Panicum virgatum Pavir.J01310 N 0.650
Pavir.Aa00349 Panicum virgatum Pavir.Aa00349 N 0.650
OLONG_015646 Oryza longistaminata OLONG_015646 N 0.650
OPUNC02G31450 Oryza punctata OPUNC02G31450 N 0.650
ORGLA02G0294700 Oryza glaberrima ORGLA02G0294700 N 0.650
OS02G0770600 Oryza sativa OS02G0770600 N 0.650
OB02G40920 Oryza brachyantha OB02G40920 N 0.644
30116.m000393 Ricinus communis 30116.m000393 N 0.641
TCM_006422 Theobroma cacao TCM_006422 N 0.639
cassava19406.valid.m1 Manihot esculenta cassava19406.valid.m1 N 0.639
PGSC0003DMG400023744 Solanum tuberosum PGSC0003DMG400023744 N 0.631
Gorai.005G260200 Gossypium raimondii Gorai.005G260200 N 0.630
VIT_12s0034g00960 Vitis vinifera VIT_12s0034g00960 N 0.622
evm.TU.supercontig_49.133 Carica papaya evm.TU.supercontig_49.133 N 0.621
SapurV1A.0869s0080 Salix purpurea SapurV1A.0869s0080 N 0.613
POPTR_0001s21610 Populus trichocarpa POPTR_0001s21610 N 0.613
PGSC0003DMG400026151 Solanum tuberosum PGSC0003DMG400026151 N 0.609
BRADI3G57700 Brachypodium distachyon BRADI3G57700 N 0.609
MDP0000634922 Malus domestica MDP0000634922 N 0.608
PRUPE_ppa007591mg Prunus persica PRUPE_ppa007591mg N 0.600
PK16821.1 Cannabis sativa PK16821.1 N 0.594
Cucsa.239250 Cucumis sativus Cucsa.239250 N 0.587
Cla002005 Citrullus lanatus Cla002005 N 0.587
VIT_18s0001g03950 Vitis vinifera VIT_18s0001g03950 N 0.587
GSMUA_Achr2G01240_001 Musa acuminata GSMUA_Achr2G01240_001 N 0.555
GSMUA_Achr8G18160_001 Musa acuminata GSMUA_Achr8G18160_001 N 0.550
Thhalv10028879m.g Eutrema salsugineum Thhalv10028879m.g N 0.541