30116.m000393 (Ricinus communis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 30116.m000393 T333895_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
30116.m000393 Sox 162 204

Links

Other Sox family TFs
Other Ricinus communis TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0647s0030 Salix purpurea SapurV1A.0647s0030 N 0.711
orange1.1g017878m.g Citrus sinensis orange1.1g017878m.g N 0.705
Ciclev10001601m.g Citrus clementina Ciclev10001601m.g N 0.705
POPTR_0003s01620 Populus trichocarpa POPTR_0003s01620 N 0.694
PGSC0003DMG400026151 Solanum tuberosum PGSC0003DMG400026151 N 0.672
PRUPE_ppa007591mg Prunus persica PRUPE_ppa007591mg N 0.662
Cucsa.239250 Cucumis sativus Cucsa.239250 N 0.655
Cla002005 Citrullus lanatus Cla002005 N 0.655
ONIVA02G36110 Oryza nivara ONIVA02G36110 I 0.653
Si017699m.g Setaria italica Si017699m.g N 0.653
LPERR02G27910 Leersia perrieri LPERR02G27910 N 0.653
OMERI02G32400 Oryza meridionalis OMERI02G32400 I 0.653
BGIOSGA009119 Oryza indica BGIOSGA009119 N 0.653
Pavir.Aa00349 Panicum virgatum Pavir.Aa00349 N 0.653
Pavir.J01310 Panicum virgatum Pavir.J01310 N 0.653
OB07G29110 Oryza brachyantha OB07G29110 N 0.653
ORUFI02G35580 Oryza rufipogon ORUFI02G35580 I 0.653
OGLUM02G35200 Oryza glumaepatula OGLUM02G35200 I 0.653
ORGLA02G0294700 Oryza glaberrima ORGLA02G0294700 N 0.653
OPUNC02G31450 Oryza punctata OPUNC02G31450 N 0.653
OLONG_015646 Oryza longistaminata OLONG_015646 N 0.653
OS02G0770600 Oryza sativa OS02G0770600 N 0.653
OBART02G34050 Oryza barthii OBART02G34050 N 0.653
SapurV1A.0869s0080 Salix purpurea SapurV1A.0869s0080 N 0.652
POPTR_0001s21610 Populus trichocarpa POPTR_0001s21610 N 0.652
PK16821.1 Cannabis sativa PK16821.1 N 0.649
OB02G40920 Oryza brachyantha OB02G40920 N 0.647
PGSC0003DMG400023744 Solanum tuberosum PGSC0003DMG400023744 N 0.646
Ciclev10001827m.g Citrus clementina Ciclev10001827m.g N 0.641
orange1.1g020440m.g Citrus sinensis orange1.1g020440m.g N 0.641
TCM_006422 Theobroma cacao TCM_006422 N 0.639
cassava19406.valid.m1 Manihot esculenta cassava19406.valid.m1 N 0.638
Aquca_014_00165 Aquilegia coerulea Aquca_014_00165 N 0.638
VIT_18s0001g03950 Vitis vinifera VIT_18s0001g03950 N 0.637
GSMUA_Achr2G01240_001 Musa acuminata GSMUA_Achr2G01240_001 N 0.617
F775_20121 Aegilops tauschii F775_20121 N 0.616
mgf013454m Mimulus guttatus mgf013454m N 0.616
Traes_6DL_647FC758E1 Triticum aestivum Traes_6DL_647FC758E1 N 0.616
MLOC_54605 Hordeum vulgare MLOC_54605 N 0.616
TRIUR3_20834 Triticum urartu TRIUR3_20834 N 0.616
mgf000387m Mimulus guttatus mgf000387m N 0.616
BRADI3G57700 Brachypodium distachyon BRADI3G57700 N 0.613
gene11787-v1.0-hybrid Fragaria vesca gene11787-v1.0-hybrid N 0.604
PK04394.1 Cannabis sativa PK04394.1 N 0.595
VIT_12s0034g00960 Vitis vinifera VIT_12s0034g00960 N 0.589
evm.TU.supercontig_49.134 Carica papaya evm.TU.supercontig_49.134 N 0.589
Gorai.005G260200 Gossypium raimondii Gorai.005G260200 N 0.580
MDP0000597087 Malus domestica MDP0000597087 N 0.574
evm.TU.supercontig_49.133 Carica papaya evm.TU.supercontig_49.133 N 0.533
MDP0000634922 Malus domestica MDP0000634922 N 0.530
GSMUA_Achr8G18160_001 Musa acuminata GSMUA_Achr8G18160_001 N 0.517
Thhalv10028879m.g Eutrema salsugineum Thhalv10028879m.g N 0.451