MDP0000597087 (Malus domestica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 MDP0000597087 T334621_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000597087 Sox 165 207

Links

Other Sox family TFs
Other Malus domestica TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_006422 Theobroma cacao TCM_006422 N 0.653
orange1.1g020440m.g Citrus sinensis orange1.1g020440m.g N 0.650
Ciclev10001827m.g Citrus clementina Ciclev10001827m.g N 0.650
Gorai.005G260200 Gossypium raimondii Gorai.005G260200 N 0.644
Aquca_014_00165 Aquilegia coerulea Aquca_014_00165 N 0.643
BRADI3G57700 Brachypodium distachyon BRADI3G57700 N 0.623
Traes_6DL_647FC758E1 Triticum aestivum Traes_6DL_647FC758E1 N 0.621
mgf013454m Mimulus guttatus mgf013454m N 0.621
mgf000387m Mimulus guttatus mgf000387m N 0.621
TRIUR3_20834 Triticum urartu TRIUR3_20834 N 0.621
F775_20121 Aegilops tauschii F775_20121 N 0.621
MLOC_54605 Hordeum vulgare MLOC_54605 N 0.621
PK04394.1 Cannabis sativa PK04394.1 N 0.611
gene11787-v1.0-hybrid Fragaria vesca gene11787-v1.0-hybrid N 0.609
evm.TU.supercontig_49.134 Carica papaya evm.TU.supercontig_49.134 N 0.605
POPTR_0003s01620 Populus trichocarpa POPTR_0003s01620 N 0.604
Ciclev10001601m.g Citrus clementina Ciclev10001601m.g N 0.600
orange1.1g017878m.g Citrus sinensis orange1.1g017878m.g N 0.600
SapurV1A.0647s0030 Salix purpurea SapurV1A.0647s0030 N 0.600
OLONG_015646 Oryza longistaminata OLONG_015646 N 0.583
ORUFI02G35580 Oryza rufipogon ORUFI02G35580 I 0.583
OGLUM02G35200 Oryza glumaepatula OGLUM02G35200 I 0.583
BGIOSGA009119 Oryza indica BGIOSGA009119 N 0.583
LPERR02G27910 Leersia perrieri LPERR02G27910 N 0.583
ONIVA02G36110 Oryza nivara ONIVA02G36110 I 0.583
Pavir.J01310 Panicum virgatum Pavir.J01310 N 0.583
OS02G0770600 Oryza sativa OS02G0770600 N 0.583
ORGLA02G0294700 Oryza glaberrima ORGLA02G0294700 N 0.583
OPUNC02G31450 Oryza punctata OPUNC02G31450 N 0.583
OMERI02G32400 Oryza meridionalis OMERI02G32400 I 0.583
Si017699m.g Setaria italica Si017699m.g N 0.583
OB07G29110 Oryza brachyantha OB07G29110 N 0.583
Pavir.Aa00349 Panicum virgatum Pavir.Aa00349 N 0.583
OBART02G34050 Oryza barthii OBART02G34050 N 0.583
OB02G40920 Oryza brachyantha OB02G40920 N 0.577
30116.m000393 Ricinus communis 30116.m000393 N 0.574
PGSC0003DMG400026151 Solanum tuberosum PGSC0003DMG400026151 N 0.572
PGSC0003DMG400023744 Solanum tuberosum PGSC0003DMG400023744 N 0.562
cassava19406.valid.m1 Manihot esculenta cassava19406.valid.m1 N 0.560
VIT_18s0001g03950 Vitis vinifera VIT_18s0001g03950 N 0.560
evm.TU.supercontig_49.133 Carica papaya evm.TU.supercontig_49.133 N 0.549
POPTR_0001s21610 Populus trichocarpa POPTR_0001s21610 N 0.547
SapurV1A.0869s0080 Salix purpurea SapurV1A.0869s0080 N 0.547
VIT_12s0034g00960 Vitis vinifera VIT_12s0034g00960 N 0.543
MDP0000634922 Malus domestica MDP0000634922 N 0.535
PRUPE_ppa007591mg Prunus persica PRUPE_ppa007591mg N 0.527
Cla002005 Citrullus lanatus Cla002005 N 0.520
Thhalv10028879m.g Eutrema salsugineum Thhalv10028879m.g N 0.520
Cucsa.239250 Cucumis sativus Cucsa.239250 N 0.520
PK16821.1 Cannabis sativa PK16821.1 N 0.514
GSMUA_Achr2G01240_001 Musa acuminata GSMUA_Achr2G01240_001 N 0.482
GSMUA_Achr8G18160_001 Musa acuminata GSMUA_Achr8G18160_001 N 0.471