Bra002058 (Brassica rapa)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 Bra002058 T014221_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.739 0.929
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.583 0.706
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra002058.1-P ARID/BRIGHT 565 650

Links

Other ARID/BRIGHT family TFs
Other Brassica rapa TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL013752 Aedes aegypti AAEL013752 I
AALB008384 Anopheles albimanus AALB008384 I
Aan_R010941 Calypte anna Aan_R010941 I
Aan_R011989 Calypte anna Aan_R011989 I
AARA004226 Anopheles arabiensis AARA004226 I
AATE016751 Anopheles atroparvus AATE016751 I
ACEP24602 Atta cephalotes ACEP24602 I
ACHR008891 Anopheles christyi ACHR008891 I
ACOM036649 Anopheles coluzzii ACOM036649 I
ACUA017169 Anopheles culicifacies ACUA017169 I
ADAC008404 Anopheles darlingi ADAC008404 I
ADIR010232 Anopheles dirus ADIR010232 I
AEPI006624 Anopheles epiroticus AEPI006624 I
AFAF011654 Anopheles farauti AFAF011654 I
Afo_R007667 Aptenodytes forsteri Afo_R007667 I
Afo_R011605 Aptenodytes forsteri Afo_R011605 I
AFUN011072 Anopheles funestus AFUN011072 I
AGAP013226 Anopheles gambiae AGAP013226 I
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I
AMAG_10999 Allomyces macrogynus AMAG_10999 I
AMAG_11601 Allomyces macrogynus AMAG_11601 I
AMEC002251 Anopheles melas AMEC002251 I
AMEM009524 Anopheles merus AMEM009524 I
AMIN003942 Anopheles minimus AMIN003942 I
AQUA006870 Anopheles quadriannulatus AQUA006870 I
ASIS020285 Anopheles sinensis ASIS020285 I
ASTEI04100 Anopheles stephensi ASTEI04100 I
A_01977 Schistosoma haematobium A_01977 I
BGIBMGA007758 Bombyx mori BGIBMGA007758 I
BN7_2967 Wickerhamomyces ciferrii BN7_2967 I
Brh_R008414 Buceros rhinoceros Brh_R008414 I
CapteG131555 Capitella teleta CapteG131555 I
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I
CGI_10006904 Crassostrea gigas CGI_10006904 I
CLEC011984 Cimex lectularius CLEC011984 I
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I
CPIJ006094 Culex quinquefasciatus CPIJ006094 I
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I
csin102559 Clonorchis sinensis csin102559 I
D915_00887 Fasciola hepatica D915_00887 I
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I
DILT_0001462801 Diphyllobothrium latum DILT_0001462801 I
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I
RFX7 Anolis carolinensis ENSACAG00000008482 I
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I
RFX7 Bos taurus ENSBTAG00000000565 I
RFX5 Bos taurus ENSBTAG00000017580 I
RFX5 Canis familiaris ENSCAFG00000012661 I
RFX7 Canis familiaris ENSCAFG00000016029 I
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I
RFX7 Callithrix jacchus ENSCJAG00000002163 I
RFX5 Callithrix jacchus ENSCJAG00000007482 I
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I
rfx5 Danio rerio ENSDARG00000063258 I
rfx7 Danio rerio ENSDARG00000077237 I
RFX7 Danio rerio ENSDARG00000103691 I
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I
ENSDORG00000004908 Dipodomys ordii ENSDORG00000004908 I
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I
RFX7 Equus caballus ENSECAG00000002379 I
RFX5 Equus caballus ENSECAG00000024774 I
RFX5 Erinaceus europaeus ENSEEUG00000010785 I
RFX7 Erinaceus europaeus ENSEEUG00000013718 I
RFX5 Echinops telfairi ENSETEG00000013503 I
RFX7 Echinops telfairi ENSETEG00000015037 I
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I
RFX5 Felis catus ENSFCAG00000005568 I
RFX7 Felis catus ENSFCAG00000029408 I
RFX5 Homo sapiens ENSG00000143390 D
RFX7 Homo sapiens ENSG00000181827 D
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I
RFX5 Gallus gallus ENSGALG00000000836 I
RFX7 Gorilla gorilla ENSGGOG00000002118 I
RFX5 Gorilla gorilla ENSGGOG00000016795 I
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I
RFX7 Loxodonta africana ENSLAFG00000018745 I
RFX5 Loxodonta africana ENSLAFG00000030906 I
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I
RFX7 Meleagris gallopavo ENSMGAG00000005745 I
RFX7 Microcebus murinus ENSMICG00000000614 I
RFX5 Myotis lucifugus ENSMLUG00000015218 I
RFX7 Myotis lucifugus ENSMLUG00000028676 I
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I
RFX7 Macaca mulatta ENSMMUG00000017801 I
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I
RFX7 Monodelphis domestica ENSMODG00000008136 I
RFX5 Monodelphis domestica ENSMODG00000018866 I
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I
Rfx5 Mus musculus ENSMUSG00000005774 I
Rfx7 Mus musculus ENSMUSG00000037674 D
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I
RFX5 Otolemur garnettii ENSOGAG00000008120 I
RFX7 Otolemur garnettii ENSOGAG00000031795 I
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I
RFX7 Ochotona princeps ENSOPRG00000003155 I
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I
RFX7 Oryzias latipes ENSORLG00000005342 I
rfx7 Oryzias latipes ENSORLG00000008583 I
ENSP00000389130 Macaca fascicularis ENSP00000389130 I
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I
RFX7 Procavia capensis ENSPCAG00000004974 I
RFX5 Procavia capensis ENSPCAG00000011056 I
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I
ENSPFOG00000003977 Poecilia formosa ENSPFOG00000003977 I
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I
RFX5 Pan troglodytes ENSPTRG00000001286 I
RFX7 Pan troglodytes ENSPTRG00000007104 I
RFX7 Pteropus vampyrus ENSPVAG00000005381 I
RFX5 Pteropus vampyrus ENSPVAG00000011680 I
Rfx5 Rattus norvegicus ENSRNOG00000021012 I
Rfx7 Rattus norvegicus ENSRNOG00000060367 I
RFX5 Sorex araneus ENSSARG00000000750 I
RFX7 Sorex araneus ENSSARG00000010801 I
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I
RFX7 Sus scrofa ENSSSCG00000004603 I
RFX5 Sus scrofa ENSSSCG00000006625 I
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I
ENSSTOG00000027249 Ictidomys tridecemlineatus ENSSTOG00000027249 I
RFX5 Tupaia belangeri ENSTBEG00000006419 I
RFX7 Tupaia belangeri ENSTBEG00000014637 I
RFX7 Taeniopygia guttata ENSTGUG00000006356 I
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I
RFX7 Takifugu rubripes ENSTRUG00000008008 I
rfx7 Takifugu rubripes ENSTRUG00000017897 I
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I
RFX5 Tursiops truncatus ENSTTRG00000007023 I
RFX7 Tursiops truncatus ENSTTRG00000010051 I
RFX7 Vicugna pacos ENSVPAG00000012402 I
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I
CG9727 Drosophila melanogaster FBgn0037445 I
GA21990 Drosophila pseudoobscura FBgn0081975 I
GF16654 Drosophila ananassae FBgn0093675 I
GG10435 Drosophila erecta FBgn0102744 I
GH18082 Drosophila grimshawi FBgn0125550 I
GI24583 Drosophila mojavensis FBgn0147305 I
GL22063 Drosophila persimilis FBgn0159655 I
GM10553 Drosophila sechellia FBgn0165499 I
GD19544 Drosophila simulans FBgn0191039 I
GJ22650 Drosophila virilis FBgn0209754 I
GK13786 Drosophila willistoni FBgn0215794 I
GE24099 Drosophila yakuba FBgn0241238 I
GB49419 Apis mellifera GB49419 I
Gfo_R003263 Geospiza fortis Gfo_R003263 I
Gfo_R004305 Geospiza fortis Gfo_R004305 I
GPLIN_000191300 Globodera pallida GPLIN_000191300 I
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I
HMEL011744 Heliconius melpomene HMEL011744 I
HmN_000672900 Hymenolepis microstoma HmN_000672900 I
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I
ISCW001129 Ixodes scapularis ISCW001129 I
KAFR_0H03130 Kazachstania africana KAFR_0H03130 I
KGM_16732 Danaus plexippus KGM_16732 I
L798_03377 Zootermopsis nevadensis L798_03377 I
LCUP014592 Lucilia cuprina LCUP014592 I
LDEC011897 Leptinotarsa decemlineata LDEC011897 I
LELG_03203 Lodderomyces elongisporus LELG_03203 I
LotgiG138119 Lottia gigantea LotgiG138119 I
MCINX003210 Melitaea cinxia MCINX003210 I
MDOA009335 Musca domestica MDOA009335 I
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I
NV23037 Nasonia vitripennis NV23037 I
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I
Ogr11408 Ophisaurus gracilis Ogr11408 I
Ogr13052 Ophisaurus gracilis Ogr13052 I
PHUM035280 Pediculus humanus PHUM035280 I
PICST_78645 Scheffersomyces stipitis PICST_78645 I
Pvit_04986 Pogona vitticeps Pvit_04986 I
Pvit_17399 Pogona vitticeps Pvit_17399 I
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I
SINV24627 Solenopsis invicta SINV24627 I
SJAG_04839 Schizosaccharomyces japonicus SJAG_04839 I
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I
Smp_040350 Schistosoma mansoni Smp_040350 I
SMU15027042 Schmidtea mediterranea SMU15027042 I
SOCG_01623 Schizosaccharomyces octosporus SOCG_01623 I
SPOG_03909 Schizosaccharomyces cryophilus SPOG_03909 I
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I
T265_11740 Opisthorchis viverrini T265_11740 I
Tal_R011248 Tyto alba Tal_R011248 I
TC008959 Tribolium castaneum TC008959 I
tetur02g00620 Tetranychus urticae tetur02g00620 I
TsM_000553100 Taenia solium TsM_000553100 I
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I
rfx7 Xenopus tropicalis XB-GENE-1008447 I
rfx5 Xenopus tropicalis XB-GENE-5942579 I
rfx5.S Xenopus laevis XB-GENE-6079297 I
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I