GFI1B (Meleagris gallopavo)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMGAG00000006129 T098134_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.812 0.942
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.812 0.942
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.812 0.942
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.810 0.935
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.810 0.935
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.810 0.935
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.810 0.935
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.810 0.935
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.810 0.935
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.800 0.928
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.787 0.855
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.786 0.899
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.786 0.899
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.786 0.899
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.786 0.899
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.786 0.899
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.786 0.899
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.786 0.899
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.786 0.899
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.784 0.891
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMGAP00000006117 C2H2 ZF 170 193
ENSMGAP00000006117 C2H2 ZF 199 221
ENSMGAP00000006117 C2H2 ZF 227 249
ENSMGAP00000006117 C2H2 ZF 255 277
ENSMGAP00000006117 C2H2 ZF 283 305
ENSMGAP00000006117 C2H2 ZF 311 334

Links

Other C2H2 ZF family TFs
Other Meleagris gallopavo TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29983.m003128 Ricinus communis 29983.m003128 I
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I
Aquca_014_00610 Aquilegia coerulea Aquca_014_00610 I
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I
AT4G03250 Arabidopsis thaliana AT4G03250 I
Bo7g067190 Brassica oleracea Bo7g067190 I
Bo9g006450 Brassica oleracea Bo9g006450 I
Bostr.2983s0116 Boechera stricta Bostr.2983s0116 I
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I
Bra033725 Brassica rapa Bra033725 I
Bra034196 Brassica rapa Bra034196 I
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I
Carubv10002996m.g Capsella rubella Carubv10002996m.g I
Carubv10025737m.g Capsella rubella Carubv10025737m.g I
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I
Ca_11272 Cicer arietinum Ca_11272 I
Ca_21400 Cicer arietinum Ca_21400 I
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I
Ciclev10014928m.g Citrus clementina Ciclev10014928m.g I
Cla008712 Citrullus lanatus Cla008712 I
Cucsa.087050 Cucumis sativus Cucsa.087050 I
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I
GLYMA02G44910 Glycine max GLYMA02G44910 I
GLYMA04G15260 Glycine max GLYMA04G15260 I
GLYMA06G44290 Glycine max GLYMA06G44290 I
GLYMA08G41330 Glycine max GLYMA08G41330 I
GLYMA14G03850 Glycine max GLYMA14G03850 I
GLYMA18G14910 Glycine max GLYMA18G14910 I
Gorai.001G134800 Gossypium raimondii Gorai.001G134800 I
Gorai.004G014700 Gossypium raimondii Gorai.004G014700 I
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I
Lus10018634.g Linum usitatissimum Lus10018634.g I
Lus10039870.g Linum usitatissimum Lus10039870.g I
MDP0000207866 Malus domestica MDP0000207866 I
mgf007720m Mimulus guttatus mgf007720m I
MTR_3g045830 Medicago truncatula MTR_3g045830 I
MTR_5g089870 Medicago truncatula MTR_5g089870 N
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I
orange1.1g010311m.g Citrus sinensis orange1.1g010311m.g I
PDK_20s1402391g002 Phoenix dactylifera PDK_20s1402391g002 I
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I
PGSC0003DMG400004714 Solanum tuberosum PGSC0003DMG400004714 I
PK06068.1 Cannabis sativa PK06068.1 I
PK25011.1 Cannabis sativa PK25011.1 D
POPTR_0001s28350 Populus trichocarpa POPTR_0001s28350 I
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I
POPTR_0009s07600 Populus trichocarpa POPTR_0009s07600 I
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I
SapurV1A.0042s0570 Salix purpurea SapurV1A.0042s0570 I
SapurV1A.0106s0340 Salix purpurea SapurV1A.0106s0340 I
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I
Solyc12g099760.1 Solanum lycopersicum Solyc12g099760.1 I
TCM_008214 Theobroma cacao TCM_008214 I
TCM_040945 Theobroma cacao TCM_040945 I
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I
Thhalv10028592m.g Eutrema salsugineum Thhalv10028592m.g I
VIT_06s0009g03530 Vitis vinifera VIT_06s0009g03530 I
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I