GSMUA_Achr3G05500_001 (Musa acuminata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 GSMUA_Achr3G05500_001 T254368_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA

TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr3P05500_001 MADS box 10 54

Links

Other MADS box family TFs
Other Musa acuminata TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30199.m000879 Ricinus communis 30199.m000879 I 0.800
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.778
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.800
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.711
Ca_06495 Cicer arietinum Ca_06495 I 0.711
Ca_08934 Cicer arietinum Ca_08934 I 0.711
Ca_13275 Cicer arietinum Ca_13275 I 0.756
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.711
Ciclev10013876m.g Citrus clementina Ciclev10013876m.g N 0.711
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.778
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.711
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.711
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.711
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.778
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.723
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.711
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.733
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.733
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.711
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.800
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.733
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.735
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.756
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.733
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.711
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.711
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.733
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.711
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.727
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.778
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.756
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.733
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.711
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.778
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.733
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.800
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.756
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.756
evm.TU.supercontig_185.6 Carica papaya evm.TU.supercontig_185.6 N 0.731
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.711
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.711
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.733
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.800
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.711
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.733
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.733
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.778
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.711
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.729
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.711
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.756
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.711
GLYMA03G19880 Glycine max GLYMA03G19880 N 0.711
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.711
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.733
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.733
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.778
GSMUA_Achr3G08500_001 Musa acuminata GSMUA_Achr3G08500_001 N 0.778
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.733
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.733
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.756
MDP0000846004 Malus domestica MDP0000846004 I 0.778
MDP0000925348 Malus domestica MDP0000925348 I 0.822
mgf026186m Mimulus guttatus mgf026186m I 0.727
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.756
MTR_4g032260 Medicago truncatula MTR_4g032260 N 0.711
MTR_4g032290 Medicago truncatula MTR_4g032290 N 0.711
orange1.1g038848m.g Citrus sinensis orange1.1g038848m.g N 0.711
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N 0.844
Pm004396 Prunus mume Pm004396 I 0.800
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.756
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.733
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.733
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.800
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.733
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.711
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.711
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.733
TCM_026842 Theobroma cacao TCM_026842 I 0.711
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.733