CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GSMUA_Achr3G05500_001
(
Musa acuminata
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
GSMUA_Achr3G05500_001
T254368_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA
TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.711
0.711
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSMUA_Achr3P05500_001
MADS box
10
54
WIVNDTARKATFKKRKKGLMKKVSELSTLCDVKACMIIYGPDEPH
Links
Other
MADS box
family TFs
Other
Musa acuminata
TFs
80 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30199.m000879
Ricinus communis
30199.m000879
I
0.800
Aquca_007_00647
Aquilegia coerulea
Aquca_007_00647
I
0.778
Aquca_027_00068
Aquilegia coerulea
Aquca_027_00068
I
0.800
cassava15247.m1
Manihot esculenta
cassava15247.m1
I
0.711
Ca_06495
Cicer arietinum
Ca_06495
I
0.711
Ca_08934
Cicer arietinum
Ca_08934
I
0.711
Ca_13275
Cicer arietinum
Ca_13275
I
0.756
chr6.LjT19B22.120.nd
Lotus japonicus
chr6.LjT19B22.120.nd
I
0.711
Ciclev10013876m.g
Citrus clementina
Ciclev10013876m.g
N
0.711
evm.TU.contig_24608
Carica papaya
evm.TU.contig_24608
I
0.778
evm.TU.contig_24864.1
Carica papaya
evm.TU.contig_24864.1
N
0.711
evm.TU.contig_25049.1
Carica papaya
evm.TU.contig_25049.1
I
0.711
evm.TU.contig_25049.2
Carica papaya
evm.TU.contig_25049.2
N
0.711
evm.TU.contig_25049.5
Carica papaya
evm.TU.contig_25049.5
I
0.778
evm.TU.contig_25253.2
Carica papaya
evm.TU.contig_25253.2
N
0.723
evm.TU.contig_25982.2
Carica papaya
evm.TU.contig_25982.2
I
0.711
evm.TU.contig_26058.1
Carica papaya
evm.TU.contig_26058.1
I
0.733
evm.TU.contig_26058.2
Carica papaya
evm.TU.contig_26058.2
I
0.733
evm.TU.contig_28448.1
Carica papaya
evm.TU.contig_28448.1
N
0.711
evm.TU.contig_28448.4
Carica papaya
evm.TU.contig_28448.4
I
0.800
evm.TU.contig_31147
Carica papaya
evm.TU.contig_31147
I
0.733
evm.TU.contig_32899.1
Carica papaya
evm.TU.contig_32899.1
I
0.735
evm.TU.contig_33457.2
Carica papaya
evm.TU.contig_33457.2
I
0.756
evm.TU.contig_35009
Carica papaya
evm.TU.contig_35009
I
0.733
evm.TU.contig_35762
Carica papaya
evm.TU.contig_35762
N
0.711
evm.TU.contig_36181
Carica papaya
evm.TU.contig_36181
I
0.711
evm.TU.contig_38760
Carica papaya
evm.TU.contig_38760
N
0.733
evm.TU.contig_40164
Carica papaya
evm.TU.contig_40164
N
0.711
evm.TU.contig_40485
Carica papaya
evm.TU.contig_40485
I
0.727
evm.TU.contig_40499.2
Carica papaya
evm.TU.contig_40499.2
I
0.778
evm.TU.contig_44957
Carica papaya
evm.TU.contig_44957
I
0.756
evm.TU.supercontig_117.18
Carica papaya
evm.TU.supercontig_117.18
I
0.733
evm.TU.supercontig_117.19
Carica papaya
evm.TU.supercontig_117.19
I
0.711
evm.TU.supercontig_1237.1
Carica papaya
evm.TU.supercontig_1237.1
I
0.778
evm.TU.supercontig_1256.1
Carica papaya
evm.TU.supercontig_1256.1
N
0.733
evm.TU.supercontig_1750.2
Carica papaya
evm.TU.supercontig_1750.2
I
0.800
evm.TU.supercontig_185.11
Carica papaya
evm.TU.supercontig_185.11
I
0.756
evm.TU.supercontig_185.2
Carica papaya
evm.TU.supercontig_185.2
I
0.756
evm.TU.supercontig_185.6
Carica papaya
evm.TU.supercontig_185.6
N
0.731
evm.TU.supercontig_185.7
Carica papaya
evm.TU.supercontig_185.7
I
0.711
evm.TU.supercontig_185.8
Carica papaya
evm.TU.supercontig_185.8
N
0.711
evm.TU.supercontig_185.9
Carica papaya
evm.TU.supercontig_185.9
I
0.733
evm.TU.supercontig_265.1
Carica papaya
evm.TU.supercontig_265.1
I
0.800
evm.TU.supercontig_265.3
Carica papaya
evm.TU.supercontig_265.3
N
0.711
evm.TU.supercontig_265.6
Carica papaya
evm.TU.supercontig_265.6
N
0.733
evm.TU.supercontig_30.164
Carica papaya
evm.TU.supercontig_30.164
N
0.733
evm.TU.supercontig_30.166
Carica papaya
evm.TU.supercontig_30.166
I
0.778
evm.TU.supercontig_358.1
Carica papaya
evm.TU.supercontig_358.1
N
0.711
gene18029-v1.0-hybrid
Fragaria vesca
gene18029-v1.0-hybrid
I
0.729
gene22916-v1.0-hybrid
Fragaria vesca
gene22916-v1.0-hybrid
I
0.711
gene22967-v1.0-hybrid
Fragaria vesca
gene22967-v1.0-hybrid
I
0.756
gene23924-v1.0-hybrid
Fragaria vesca
gene23924-v1.0-hybrid
I
0.711
GLYMA03G19880
Glycine max
GLYMA03G19880
N
0.711
GLYMA11G33460
Glycine max
GLYMA11G33460
I
0.711
GLYMA18G04760
Glycine max
GLYMA18G04760
I
0.733
Gorai.004G292000
Gossypium raimondii
Gorai.004G292000
I
0.733
GSMUA_Achr2G18400_001
Musa acuminata
GSMUA_Achr2G18400_001
N
0.778
GSMUA_Achr3G08500_001
Musa acuminata
GSMUA_Achr3G08500_001
N
0.778
LjT40B16.70.nc
Lotus japonicus
LjT40B16.70.nc
I
0.733
Lus10014578.g
Linum usitatissimum
Lus10014578.g
I
0.733
Lus10032108.g
Linum usitatissimum
Lus10032108.g
I
0.756
MDP0000846004
Malus domestica
MDP0000846004
I
0.778
MDP0000925348
Malus domestica
MDP0000925348
I
0.822
mgf026186m
Mimulus guttatus
mgf026186m
I
0.727
MTR_3g065100
Medicago truncatula
MTR_3g065100
I
0.756
MTR_4g032260
Medicago truncatula
MTR_4g032260
N
0.711
MTR_4g032290
Medicago truncatula
MTR_4g032290
N
0.711
orange1.1g038848m.g
Citrus sinensis
orange1.1g038848m.g
N
0.711
PDK_20s1688321g001
Phoenix dactylifera
PDK_20s1688321g001
N
0.844
Pm004396
Prunus mume
Pm004396
I
0.800
POPTR_0005s00420
Populus trichocarpa
POPTR_0005s00420
I
0.756
POPTR_0013s00350
Populus trichocarpa
POPTR_0013s00350
I
0.733
POPTR_0013s01880
Populus trichocarpa
POPTR_0013s01880
I
0.733
PRUPE_ppa018168mg
Prunus persica
PRUPE_ppa018168mg
I
0.800
SapurV1A.0066s0310
Salix purpurea
SapurV1A.0066s0310
I
0.733
SapurV1A.0442s0180
Salix purpurea
SapurV1A.0442s0180
I
0.711
SapurV1A.0442s0190
Salix purpurea
SapurV1A.0442s0190
I
0.711
Solyc01g102260.2
Solanum lycopersicum
Solyc01g102260.2
I
0.733
TCM_026842
Theobroma cacao
TCM_026842
I
0.711
VIT_14s0060g00300
Vitis vinifera
VIT_14s0060g00300
I
0.733