RFX7 (Danio rerio)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSDARG00000103691 T318196_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.784 0.949
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.784 0.949
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.784 0.949
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.784 0.949
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.716 0.646
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.716 0.646
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.716 0.646
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.716 0.646
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.716 0.646
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.716 0.646
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.716 0.646
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.716 0.646
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.716 0.646
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.716 0.646
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.716 0.646
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.716 0.646
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.716 0.646
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.716 0.646
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.716 0.646
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000133236 RFX 99 177

Links

Other RFX family TFs
Other Danio rerio TFs

236 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL013752 Aedes aegypti AAEL013752 I 0.686
AALB008384 Anopheles albimanus AALB008384 I 0.689
Aan_R010941 Calypte anna Aan_R010941 I 0.699
Aan_R011989 Calypte anna Aan_R011989 I 0.778
AARA004226 Anopheles arabiensis AARA004226 I 0.689
AATE016751 Anopheles atroparvus AATE016751 I 0.689
ACEP24602 Atta cephalotes ACEP24602 I 0.700
ACHR008891 Anopheles christyi ACHR008891 I 0.689
ACOM036649 Anopheles coluzzii ACOM036649 I 0.689
ACUA017169 Anopheles culicifacies ACUA017169 I 0.689
ADAC008404 Anopheles darlingi ADAC008404 I 0.689
ADIR010232 Anopheles dirus ADIR010232 I 0.689
AEPI006624 Anopheles epiroticus AEPI006624 I 0.689
AFAF011654 Anopheles farauti AFAF011654 I 0.689
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.716
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.778
AFUN011072 Anopheles funestus AFUN011072 I 0.689
AGAP013226 Anopheles gambiae AGAP013226 I 0.689
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.769
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.712
AMAG_10999 Allomyces macrogynus AMAG_10999 I 0.657
AMAG_11601 Allomyces macrogynus AMAG_11601 I 0.657
AMEC002251 Anopheles melas AMEC002251 I 0.689
AMEM009524 Anopheles merus AMEM009524 I 0.689
AMIN003942 Anopheles minimus AMIN003942 I 0.689
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.689
ASIS020285 Anopheles sinensis ASIS020285 I 0.689
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.689
A_01977 Schistosoma haematobium A_01977 I 0.712
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.678
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.769
CAOG_00356 Capsaspora owczarzaki CAOG_00356 I 0.650
CapteG131555 Capitella teleta CapteG131555 I 0.693
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.686
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.711
CLEC011984 Cimex lectularius CLEC011984 I 0.682
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.672
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.681
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.686
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.686
csin102559 Clonorchis sinensis csin102559 I 0.723
D915_00887 Fasciola hepatica D915_00887 I 0.664
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.700
DILT_0001462801 Diphyllobothrium latum DILT_0001462801 I 0.655
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.710
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.663
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.710
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.783
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.717
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.711
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.784
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.716
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.795
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.793
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.679
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.784
RFX7 Bos taurus ENSBTAG00000000565 I 0.784
RFX5 Bos taurus ENSBTAG00000017580 I 0.716
RFX5 Canis familiaris ENSCAFG00000012661 I 0.716
RFX7 Canis familiaris ENSCAFG00000016029 I 0.784
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.784
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.712
RFX7 Callithrix jacchus ENSCJAG00000002163 I 0.689
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.716
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.784
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.716
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.716
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.784
rfx5 Danio rerio ENSDARG00000063258 I 0.720
rfx7 Danio rerio ENSDARG00000077237 I 0.788
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.784
ENSDORG00000004908 Dipodomys ordii ENSDORG00000004908 I 0.688
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.716
RFX7 Equus caballus ENSECAG00000002379 I 0.778
RFX5 Equus caballus ENSECAG00000024774 I 0.716
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.702
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.769
RFX5 Echinops telfairi ENSETEG00000013503 I 0.716
RFX7 Echinops telfairi ENSETEG00000015037 I 0.764
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.722
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.784
RFX5 Felis catus ENSFCAG00000005568 I 0.716
RFX7 Felis catus ENSFCAG00000029408 I 0.778
RFX5 Homo sapiens ENSG00000143390 D 0.716
RFX7 Homo sapiens ENSG00000181827 D 0.784
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.791
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.769
RFX5 Gallus gallus ENSGALG00000000836 I 0.717
RFX7 Gorilla gorilla ENSGGOG00000002118 I 0.689
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.716
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.778
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.791
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.784
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.784
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.716
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.719
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.794
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.688
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.716
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.720
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.784
RFX7 Microcebus murinus ENSMICG00000000614 I 0.674
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.711
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.778
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.716
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.778
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.778
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.784
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.669
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.784
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.716
Rfx5 Mus musculus ENSMUSG00000005774 I 0.716
Rfx7 Mus musculus ENSMUSG00000037674 D 0.784
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.784
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.716
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.784
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.780
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.716
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.716
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.784
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.716
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.780
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.720
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.769
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.791
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.682
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.718
RFX7 Oryzias latipes ENSORLG00000005342 I 0.791
rfx7 Oryzias latipes ENSORLG00000008583 I 0.772
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.716
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.716
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.779
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.716
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.784
RFX7 Procavia capensis ENSPCAG00000004974 I 0.784
RFX5 Procavia capensis ENSPCAG00000011056 I 0.716
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.766
ENSPFOG00000003977 Poecilia formosa ENSPFOG00000003977 I 0.681
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.720
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.767
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.716
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.784
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.784
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.702
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.716
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.784
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.782
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.716
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.716
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.784
RFX5 Sorex araneus ENSSARG00000000750 I 0.716
RFX7 Sorex araneus ENSSARG00000010801 I 0.778
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.784
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.716
RFX7 Sus scrofa ENSSSCG00000004603 I 0.686
RFX5 Sus scrofa ENSSSCG00000006625 I 0.716
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.689
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.718
ENSSTOG00000027249 Ictidomys tridecemlineatus ENSSTOG00000027249 I 0.683
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.716
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.678
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.778
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.722
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.762
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.782
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.722
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.782
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.764
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.784
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.671
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.716
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.781
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.784
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.766
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.791
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.720
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.728
CG9727 Drosophila melanogaster FBgn0037445 I 0.685
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.685
GF16654 Drosophila ananassae FBgn0093675 I 0.685
GG10435 Drosophila erecta FBgn0102744 I 0.685
GH18082 Drosophila grimshawi FBgn0125550 I 0.685
GI24583 Drosophila mojavensis FBgn0147305 I 0.685
GL22063 Drosophila persimilis FBgn0159655 I 0.685
GM10553 Drosophila sechellia FBgn0165499 I 0.685
GD19544 Drosophila simulans FBgn0191039 I 0.685
GJ22650 Drosophila virilis FBgn0209754 I 0.685
GK13786 Drosophila willistoni FBgn0215794 I 0.685
GE24099 Drosophila yakuba FBgn0241238 I 0.685
GB49419 Apis mellifera GB49419 I 0.700
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.722
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.778
GPLIN_000191300 Globodera pallida GPLIN_000191300 I 0.653
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.717
HMEL011744 Heliconius melpomene HMEL011744 I 0.692
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.717
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.715
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.700
ISCW001129 Ixodes scapularis ISCW001129 I 0.683
KAFR_0H03130 Kazachstania africana KAFR_0H03130 I 0.652
KGM_16732 Danaus plexippus KGM_16732 I 0.691
L798_03377 Zootermopsis nevadensis L798_03377 I 0.701
LCUP014592 Lucilia cuprina LCUP014592 I 0.688
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.701
LELG_03203 Lodderomyces elongisporus LELG_03203 I 0.653
LotgiG138119 Lottia gigantea LotgiG138119 I 0.708
MCINX003210 Melitaea cinxia MCINX003210 I 0.691
MDOA009335 Musca domestica MDOA009335 I 0.689
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.711
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.776
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.711
NV23037 Nasonia vitripennis NV23037 I 0.699
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.720
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.691
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.702
PHUM035280 Pediculus humanus PHUM035280 I 0.693
PICST_78645 Scheffersomyces stipitis PICST_78645 I 0.650
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.711
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.772
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.664
SINV24627 Solenopsis invicta SINV24627 I 0.700
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.701
Smp_040350 Schistosoma mansoni Smp_040350 I 0.712
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.710
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.725
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.701
T265_11740 Opisthorchis viverrini T265_11740 I 0.723
Tal_R011248 Tyto alba Tal_R011248 I 0.684
TC008959 Tribolium castaneum TC008959 I 0.694
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.694
TsM_000553100 Taenia solium TsM_000553100 I 0.710
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.710
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.782
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.719
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.706
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.709