Bo4g197410 (Brassica oleracea)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bo4g197410 T018672_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M01646_2.00 		Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN		 PBM
Weirauch et al.(2014)
pTH8592 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g197410.1 B3 28 130

Links

Other B3 family TFs
Other Brassica oleracea TFs

268 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.745
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.810
Bra040478 Brassica rapa Bra040478 I 0.980
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.810
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.750
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.822
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.840
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.723
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.832
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.860
GRMZM2G018336 Zea mays GRMZM2G018336 I 0.710
GRMZM2G065538 Zea mays GRMZM2G065538 I 0.710
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.760
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.792
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.782
MLOC_38822 Hordeum vulgare MLOC_38822 I 0.703
MLOC_44012 Hordeum vulgare MLOC_44012 I 0.714
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.800
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.840
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.850
OB02G35380 Oryza brachyantha OB02G35380 I 0.792
OBART04G22880 Oryza barthii OBART04G22880 I 0.810
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.810
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.711
OLONG_010584 Oryza longistaminata OLONG_010584 I 0.723
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.810
OPUNC04G20430 Oryza punctata OPUNC04G20430 I 0.865
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.810
ORUFI04G24570 Oryza rufipogon ORUFI04G24570 I 0.740
OS04G0581400 Oryza sativa OS04G0581400 I 0.810
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.832
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.832
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.880
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.851
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.870
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.871
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.880
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.717
NGA4 Arabidopsis lyrata scaffold_604140.1 I 0.707
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.840
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.822
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.861
TCM_005014 Theobroma cacao TCM_005014 I 0.900
TCM_015590 Theobroma cacao TCM_015590 I 0.890
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I 0.741
Traes_1BL_60A56C455 Triticum aestivum Traes_1BL_60A56C455 I 0.700
Traes_1BL_F14523046 Triticum aestivum Traes_1BL_F14523046 I 0.700
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.809
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.893
Traes_4DL_59B1C9052 Triticum aestivum Traes_4DL_59B1C9052 I 0.700
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.800
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.800
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.743
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.861
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.830
Ca_01368 Cicer arietinum Ca_01368 I 0.832
Ca_25633 Cicer arietinum Ca_25633 I 0.720
Cla006845 Citrullus lanatus Cla006845 I 0.792
Cla017937 Citrullus lanatus Cla017937 I 0.703
Pm024248 Prunus mume Pm024248 I 0.880
30068.m002615 Ricinus communis 30068.m002615 I 0.832
30076.m004471 Ricinus communis 30076.m004471 I 0.880
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.851
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.832
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.822
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.812
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.720
mgf023686m Mimulus guttatus mgf023686m I 0.760
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.822
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.713
Cagra.0483s0046 Capsella grandiflora Cagra.0483s0046 I 0.832
Cagra.11546s0001 Capsella grandiflora Cagra.11546s0001 I 0.703
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.762
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.762
Carubv10010429m.g Capsella rubella Carubv10010429m.g I 0.703
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.822
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.727
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.851
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.880
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.822
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.880
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.720
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.871
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.870
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.871
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.710
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.851
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.890
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.713
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.880
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.860
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.820
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.850
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.851
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.880
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.727
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.733
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.881
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.871
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.851
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I 0.886
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.842
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.733
PK04952.1 Cannabis sativa PK04952.1 I 0.710
PK11025.1 Cannabis sativa PK11025.1 I 0.861
PK21157.1 Cannabis sativa PK21157.1 I 0.802
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.861
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.851
AC216872.3_FG002 Zea mays AC216872.3_FG002 N 0.700
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.750
NGA3 Arabidopsis thaliana AT1G01030 N 0.822
ARF31 Arabidopsis thaliana AT2G36080 N 0.703
NGA1 Arabidopsis thaliana AT2G46870 N 0.930
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.713
NGA2 Arabidopsis thaliana AT3G61970 N 0.822
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.760
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.772
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.822
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.760
Bo01079s020 Brassica oleracea Bo01079s020 N 0.703
Bo3g001110 Brassica oleracea Bo3g001110 N 0.792
Bo3g039420 Brassica oleracea Bo3g039420 N 0.911
Bo3g064320 Brassica oleracea Bo3g064320 N 0.720
Bo4g006900 Brassica oleracea Bo4g006900 N 0.901
Bo4g099000 Brassica oleracea Bo4g099000 N 0.820
Bo5g002790 Brassica oleracea Bo5g002790 N 0.812
Bo5g136360 Brassica oleracea Bo5g136360 N 0.730
Bo6g079210 Brassica oleracea Bo6g079210 N 0.870
Bo8g097490 Brassica oleracea Bo8g097490 N 0.860
Bo9g176470 Brassica oleracea Bo9g176470 N 0.730
Bra000434 Brassica rapa Bra000434 N 0.910
Bra001411 Brassica rapa Bra001411 N 0.703
Bra003482 Brassica rapa Bra003482 N 0.842
Bra004501 Brassica rapa Bra004501 N 0.901
Bra005886 Brassica rapa Bra005886 N 0.700
Bra007646 Brassica rapa Bra007646 N 0.860
Bra014415 Brassica rapa Bra014415 N 0.822
Bra017262 Brassica rapa Bra017262 N 0.710
Bra030497 Brassica rapa Bra030497 N 0.802
Bra033294 Brassica rapa Bra033294 N 0.800
Bra034828 Brassica rapa Bra034828 N 0.723
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.772
F775_04153 Aegilops tauschii F775_04153 N 0.740
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.822
fgenesh2_kg.181__3__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.181__3__AT2G46870.1 N 0.930
fgenesh2_kg.4__2914__AT2G46870.1 Arabidopsis lyrata fgenesh2_kg.4__2914__AT2G46870.1 N 0.930
NGA2 Arabidopsis lyrata fgenesh2_kg.5__2696__AT3G61970.1 N 0.832
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.760
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.802
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.762
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.800
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.802
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.772
GRMZM2G125095 Zea mays GRMZM2G125095 N 0.700
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.737
GSMUA_Achr4G30170_001 Musa acuminata GSMUA_Achr4G30170_001 N 0.707
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N 0.752
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.720
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.840
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.800
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.760
MLOC_48938 Hordeum vulgare MLOC_48938 N 0.841
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.733
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.713
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.743
OB03G11610 Oryza brachyantha OB03G11610 N 0.840
OB10G24100 Oryza brachyantha OB10G24100 N 0.756
OB12G13420 Oryza brachyantha OB12G13420 N 0.703
OBART02G28100 Oryza barthii OBART02G28100 N 0.772
OBART03G01650 Oryza barthii OBART03G01650 N 0.822
OBART10G17010 Oryza barthii OBART10G17010 N 0.760
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.772
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.822
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.760
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.772
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.822
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.752
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.710
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.822
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.760
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.772
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.772
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.822
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.760
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.772
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.822
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.760
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.772
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.760
OS02G0683500 Oryza sativa OS02G0683500 N 0.772
OS03G0120900 Oryza sativa OS03G0120900 N 0.822
OS10G0537100 Oryza sativa OS10G0537100 N 0.760
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.740
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.871
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.713
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.812
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.735
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.812
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.762
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.782
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.713
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.703
SELMODRAFT_59317 Selaginella moellendorffii SELMODRAFT_59317 N 0.718
Si011823m.g Setaria italica Si011823m.g N 0.782
Si020241m.g Setaria italica Si020241m.g N 0.743
Si027632m.g Setaria italica Si027632m.g N 0.703
Si036864m.g Setaria italica Si036864m.g N 0.820
Si039972m.g Setaria italica Si039972m.g N 0.733
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.740
TCM_022729 Theobroma cacao TCM_022729 N 0.737
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.723
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.782
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.707
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.782
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.820
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.772
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N 0.700
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N 0.700
TRIUR3_01515 Triticum urartu TRIUR3_01515 N 0.753
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.742
TRIUR3_29732 Triticum urartu TRIUR3_29732 N 0.743
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.723
Ca_00826 Cicer arietinum Ca_00826 N 0.723
Cla005055 Citrullus lanatus Cla005055 N 0.806
Cla014858 Citrullus lanatus Cla014858 N 0.838
Pm028725 Prunus mume Pm028725 N 0.822
30032.m000462 Ricinus communis 30032.m000462 N 0.723
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.713
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.700
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.848
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.782
mgf019085m Mimulus guttatus mgf019085m N 0.713
mgf023769m Mimulus guttatus mgf023769m N 0.842
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.743
Bostr.13158s0202 Boechera stricta Bostr.13158s0202 N 0.832
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.713
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.703
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.930
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.820
Cagra.0050s0013 Capsella grandiflora Cagra.0050s0013 N 0.930
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.703
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.713
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.822
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.822
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.713
Carubv10023656m.g Capsella rubella Carubv10023656m.g N 0.930
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.703
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.840
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.723
Lus10021326.g Linum usitatissimum Lus10021326.g N 0.710
MDP0000128295 Malus domestica MDP0000128295 N 0.872
MDP0000138163 Malus domestica MDP0000138163 N 0.822
MDP0000288808 Malus domestica MDP0000288808 N 0.792
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.762
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.782
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.810
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.810
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.733
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.768
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.733
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.782
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.720
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N 0.700
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.720
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.930
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.822
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.703
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.710