Pavir.Ia03096 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Ia03096 T143379_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZFP5
M01851_2.00 		Arabidopsis thaliana
DSWTNNNN
NNNNAWSH		 PBM
Weirauch et al.(2014)
pTH7539 		0.764 0.652
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia03096.1.p C2H2 ZF 33 55
Pavir.Ia03096.2.p C2H2 ZF 33 55

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2G Arabidopsis thaliana AT5G18450 D 0.000
Q1ESI9_MAIZE Zea mays Q1ESI9_MAIZE D 0.000
DREB2D Arabidopsis thaliana AT1G75490 D 0.000
Pm018989 Prunus mume Pm018989 I 0.000
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.000
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.000
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.000
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.000
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.000
Bostr.23794s0027 Boechera stricta Bostr.23794s0027 I 0.000
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I 0.000
Aquca_013_00679 Aquilegia coerulea Aquca_013_00679 I 0.000
mgf017629m Mimulus guttatus mgf017629m I 0.000
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.000
Cucsa.119440 Cucumis sativus Cucsa.119440 I 0.000
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I 0.000
Pm003634 Prunus mume Pm003634 I 0.000
Cla022803 Citrullus lanatus Cla022803 I 0.000
Cla001755 Citrullus lanatus Cla001755 I 0.000
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.000
TRIUR3_17409 Triticum urartu TRIUR3_17409 I 0.000
Traes_2DL_B32203C91 Triticum aestivum Traes_2DL_B32203C91 I 0.000
Traes_2BL_B397F2CE3 Triticum aestivum Traes_2BL_B397F2CE3 I 0.000
Traes_2AL_3FB37A3E7 Triticum aestivum Traes_2AL_3FB37A3E7 I 0.000
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I 0.000
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.000
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.000
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.000
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.000
Pavir.J25464 Panicum virgatum Pavir.J25464 I 0.000
Pavir.J22169 Panicum virgatum Pavir.J22169 I 0.000
Pavir.Cb01298 Panicum virgatum Pavir.Cb01298 I 0.000
Pavir.Ca01725 Panicum virgatum Pavir.Ca01725 I 0.000
MDP0000446783 Malus domestica MDP0000446783 I 0.000
MDP0000250924 Malus domestica MDP0000250924 I 0.000
MDP0000165880 Malus domestica MDP0000165880 I 0.000
MDP0000147009 Malus domestica MDP0000147009 I 0.000
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.000
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.000
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.000
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.000
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.000
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.000
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.000
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.000
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.000
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.000
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.000
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.000
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.000
F775_01779 Aegilops tauschii F775_01779 I 0.000
MLOC_12223 Hordeum vulgare MLOC_12223 I 0.000
LPERR08G20650 Leersia perrieri LPERR08G20650 I 0.000
LPERR08G12790 Leersia perrieri LPERR08G12790 I 0.000
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.000
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.000
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.000
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.000
GRMZM2G006745 Zea mays GRMZM2G006745 I 0.000
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.000
F775_32062 Aegilops tauschii F775_32062 I 0.000
F775_02345 Aegilops tauschii F775_02345 I 0.000
MLOC_66580 Hordeum vulgare MLOC_66580 I 0.000
BRADI3G12680 Brachypodium distachyon BRADI3G12680 I 0.000
Bra015840 Brassica rapa Bra015840 I 0.000
Bra008200 Brassica rapa Bra008200 I 0.000
Bra003752 Brassica rapa Bra003752 I 0.000
Bra002159 Brassica rapa Bra002159 I 0.000
Bo9g155940 Brassica oleracea Bo9g155940 I 0.000
Bo6g119660 Brassica oleracea Bo6g119660 I 0.000
Bo6g086320 Brassica oleracea Bo6g086320 I 0.000
Bo2g083920 Brassica oleracea Bo2g083920 I 0.000
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.000
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.000
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I 0.000
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.000
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.000
Si024059m.g Setaria italica Si024059m.g I 0.000
Si022619m.g Setaria italica Si022619m.g I 0.000
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.000
Sb09g016150 Sorghum bicolor Sb09g016150 I 0.000
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.000
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.000
TCM_026121 Theobroma cacao TCM_026121 I 0.000
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.000
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.000
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.000
DREB2C Oryza sativa OS08G0565200 I 0.000
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.000
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.000
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.000
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.000
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.000
OB08G30790 Oryza brachyantha OB08G30790 I 0.000
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.000
SELMODRAFT_38498 Selaginella moellendorffii SELMODRAFT_38498 N 0.000
SELMODRAFT_38500 Selaginella moellendorffii SELMODRAFT_38500 N 0.000
TRIUR3_03342 Triticum urartu TRIUR3_03342 N 0.000