SCL5 (Populus trichocarpa)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03514 (GRAS) IPR005202 POPTR_0001s37270 T201171_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s37270.1 GRAS 163 533
POPTR_0001s37270.2 GRAS 163 533
POPTR_0001s37270.3 GRAS 163 533

Links

Other GRAS family TFs
Other Populus trichocarpa TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.2766s0005 Capsella grandiflora Cagra.2766s0005 N 0.759
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N 0.786
gene03551-v1.0-hybrid Fragaria vesca gene03551-v1.0-hybrid N 0.783
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N 0.778
evm.TU.supercontig_12.194 Carica papaya evm.TU.supercontig_12.194 N 0.780
Eucgr.F03523 Eucalyptus grandis Eucgr.F03523 N 0.759
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N 0.759
Ciclev10014845m.g Citrus clementina Ciclev10014845m.g N 0.759
Ciclev10007927m.g Citrus clementina Ciclev10007927m.g N 0.767
Carubv10026289m.g Capsella rubella Carubv10026289m.g N 0.759
Carubv10008830m.g Capsella rubella Carubv10008830m.g N 0.724
Cagra.7055s0004 Capsella grandiflora Cagra.7055s0004 N 0.724
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.789
Bostr.5224s0004 Boechera stricta Bostr.5224s0004 N 0.751
Bostr.26675s0117 Boechera stricta Bostr.26675s0117 N 0.726
Aquca_028_00248 Aquilegia coerulea Aquca_028_00248 N 0.726
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.770
Cucsa.120390 Cucumis sativus Cucsa.120390 N 0.762
Cucsa.042310 Cucumis sativus Cucsa.042310 N 0.740
cassava8885.m1 Manihot esculenta cassava8885.m1 N 0.702
cassava34699.m1 Manihot esculenta cassava34699.m1 N 0.848
cassava34106.m1 Manihot esculenta cassava34106.m1 N 0.780
cassava10826.m1 Manihot esculenta cassava10826.m1 N 0.854
MDP0000804652 Malus domestica MDP0000804652 N 0.780
PDK_20s1411471g003 Phoenix dactylifera PDK_20s1411471g003 N 0.740
LjSGA_018703.2 Lotus japonicus LjSGA_018703.2 N 0.783
chr6.LjT11E14.20.nc Lotus japonicus chr6.LjT11E14.20.nc N 0.721
PK15082.1 Cannabis sativa PK15082.1 N 0.740
PK09018.1 Cannabis sativa PK09018.1 N 0.745
Thhalv10011379m.g Eutrema salsugineum Thhalv10011379m.g N 0.721
Thhalv10004053m.g Eutrema salsugineum Thhalv10004053m.g N 0.730
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N 0.778
SapurV1A.0030s0420 Salix purpurea SapurV1A.0030s0420 N 0.924
orange1.1g009376m.g Citrus sinensis orange1.1g009376m.g N 0.762
29949.m000124 Ricinus communis 29949.m000124 N 0.794
MDP0000284679 Malus domestica MDP0000284679 N 0.772
MDP0000205236 Malus domestica MDP0000205236 N 0.772
MDP0000152670 Malus domestica MDP0000152670 N 0.778
Lus10016596.g Linum usitatissimum Lus10016596.g N 0.810
Lus10012323.g Linum usitatissimum Lus10012323.g N 0.730
Lus10006369.g Linum usitatissimum Lus10006369.g N 0.733
Lus10003772.g Linum usitatissimum Lus10003772.g N 0.816
Gorai.009G446100 Gossypium raimondii Gorai.009G446100 N 0.778
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.797
Gorai.002G096300 Gossypium raimondii Gorai.002G096300 N 0.767
Bra036185 Brassica rapa Bra036185 N 0.732
MTR_5g094450 Medicago truncatula MTR_5g094450 N 0.726
MTR_3g056110 Medicago truncatula MTR_3g056110 N 0.713
GLYMA18G09030 Glycine max GLYMA18G09030 N 0.707
GLYMA14G01960 Glycine max GLYMA14G01960 N 0.732
GLYMA14G01020 Glycine max GLYMA14G01020 N 0.789
GLYMA09G22110 Glycine max GLYMA09G22110 N 0.718
GLYMA08G43780 Glycine max GLYMA08G43780 N 0.705
GLYMA02G47640 Glycine max GLYMA02G47640 N 0.775
GLYMA02G46730 Glycine max GLYMA02G46730 N 0.734
SCL5 Arabidopsis lyrata fgenesh2_kg.1__4145__AT1G50600.1 N 0.729
Bra037509 Brassica rapa Bra037509 N 0.707
MTR_5g097480 Medicago truncatula MTR_5g097480 N 0.772
Bra026077 Brassica rapa Bra026077 N 0.736
Bra020715 Brassica rapa Bra020715 N 0.743
Bra018860 Brassica rapa Bra018860 N 0.732
Bo9g009260 Brassica oleracea Bo9g009260 N 0.732
Bo9g009240 Brassica oleracea Bo9g009240 N 0.780
Bo7g089080 Brassica oleracea Bo7g089080 N 0.732
Bo6g022330 Brassica oleracea Bo6g022330 N 0.732
Bo2g149670 Brassica oleracea Bo2g149670 N 0.743
PAT1 Arabidopsis thaliana AT5G48150 N 0.759
SCL5 Arabidopsis thaliana AT1G50600 N 0.729
TCM_002319 Theobroma cacao TCM_002319 N 0.794
27613.m000642 Ricinus communis 27613.m000642 N 0.846
Pm015021 Prunus mume Pm015021 N 0.783
Pm012019 Prunus mume Pm012019 N 0.797
Cla004565 Citrullus lanatus Cla004565 N 0.751
Cla001429 Citrullus lanatus Cla001429 N 0.759
Ca_13855 Cicer arietinum Ca_13855 N 0.724
Ca_09786 Cicer arietinum Ca_09786 N 0.775
SCL5 Vitis vinifera VIT_19s0090g01740 N 0.772
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N 0.802
TCM_030733 Theobroma cacao TCM_030733 N 0.808
AMTR_s00088p00161000 Amborella trichopoda AMTR_s00088p00161000 N 0.707
Solyc07g065270.1 Solanum lycopersicum Solyc07g065270.1 N 0.767
Solyc07g047950.1 Solanum lycopersicum Solyc07g047950.1 N 0.772
PAT1 Arabidopsis lyrata scaffold_801100.1 N 0.745
PRUPE_ppa004136mg Prunus persica PRUPE_ppa004136mg N 0.770
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.780
POPTR_0014s16230 Populus trichocarpa POPTR_0014s16230 N 0.778
PGSC0003DMG400022187 Solanum tuberosum PGSC0003DMG400022187 N 0.759
PGSC0003DMG400006132 Solanum tuberosum PGSC0003DMG400006132 N 0.767
CIGR2 Oryza sativa OS07G0583600 N 0.701