POPTR_0016s15060 (Populus trichocarpa)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03514 (GRAS) IPR005202 POPTR_0016s15060 T201247_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0016s15060.1 GRAS 412 770

Links

Other GRAS family TFs
Other Populus trichocarpa TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00032p00179410 Amborella trichopoda AMTR_s00032p00179410 N
AMTR_s00077p00190160 Amborella trichopoda AMTR_s00077p00190160 N 0.810
SCR Arabidopsis thaliana AT3G54220 N 0.883
SCL23 Arabidopsis thaliana AT5G41920 N
BGIOSGA025964 Oryza indica BGIOSGA025964 N
BGIOSGA036912 Oryza indica BGIOSGA036912 N 0.819
Bo4g143710 Brassica oleracea Bo4g143710 N
Bo8g083500 Brassica oleracea Bo8g083500 N 0.886
Bra007056 Brassica rapa Bra007056 N 0.875
Bra025456 Brassica rapa Bra025456 N
BRADI1G24310 Brachypodium distachyon BRADI1G24310 N
BRADI4G44090 Brachypodium distachyon BRADI4G44090 N
SCR Arabidopsis lyrata fgenesh2_kg.5__1811__AT3G54220.1 N 0.883
fgenesh2_kg.7__3225__AT5G41920.1 Arabidopsis lyrata fgenesh2_kg.7__3225__AT5G41920.1 N
GLYMA09G40620 Glycine max GLYMA09G40620 N 0.910
GLYMA11G10220 Glycine max GLYMA11G10220 N
GLYMA18G45220 Glycine max GLYMA18G45220 N 0.903
GRMZM2G015080 Zea mays GRMZM2G015080 N 0.782
GRMZM2G106548 Zea mays GRMZM2G106548 N
GRMZM2G131516 Zea mays GRMZM2G131516 N 0.856
GSMUA_Achr8G09400_001 Musa acuminata GSMUA_Achr8G09400_001 N 0.838
LPERR07G16410 Leersia perrieri LPERR07G16410 N
MLOC_62589 Hordeum vulgare MLOC_62589 N
MLOC_64716 Hordeum vulgare MLOC_64716 N 0.794
MLOC_79758 Hordeum vulgare MLOC_79758 N
MTR_4g076020 Medicago truncatula MTR_4g076020 N
MTR_7g074650 Medicago truncatula MTR_7g074650 N 0.900
OB07G24850 Oryza brachyantha OB07G24850 N 0.719
OB11G11140 Oryza brachyantha OB11G11140 N
OB12G11340 Oryza brachyantha OB12G11340 N
OBART07G19080 Oryza barthii OBART07G19080 N
OBART11G01460 Oryza barthii OBART11G01460 N 0.798
OBART12G01190 Oryza barthii OBART12G01190 N 0.821
OGLUM07G18870 Oryza glumaepatula OGLUM07G18870 N
OGLUM11G01180 Oryza glumaepatula OGLUM11G01180 N 0.821
OGLUM12G01020 Oryza glumaepatula OGLUM12G01020 N
OLONG_010321 Oryza longistaminata OLONG_010321 N 0.821
OMERI07G15800 Oryza meridionalis OMERI07G15800 N
ONIVA07G17430 Oryza nivara ONIVA07G17430 N
ONIVA11G01600 Oryza nivara ONIVA11G01600 N
OPUNC07G17970 Oryza punctata OPUNC07G17970 N
OPUNC07G18000 Oryza punctata OPUNC07G18000 N
OPUNC11G01240 Oryza punctata OPUNC11G01240 N
ORGLA07G0244600 Oryza glaberrima ORGLA07G0244600 N
ORUFI07G19860 Oryza rufipogon ORUFI07G19860 N
ORUFI11G01380 Oryza rufipogon ORUFI11G01380 N 0.794
ORUFI12G01460 Oryza rufipogon ORUFI12G01460 N 0.819
OS07G0567700 Oryza sativa OS07G0567700 N 0.719
SCR1 Oryza sativa OS11G0124300 N 0.814
SCR2 Oryza sativa OS12G0122000 N 0.819
PGSC0003DMG400011742 Solanum tuberosum PGSC0003DMG400011742 N
PGSC0003DMG400016833 Solanum tuberosum PGSC0003DMG400016833 N 0.886
POPTR_0006s02220 Populus trichocarpa POPTR_0006s02220 N
POPTR_0016s02030 Populus trichocarpa POPTR_0016s02030 N
PRUPE_ppa001546mg Prunus persica PRUPE_ppa001546mg N 0.928
PRUPE_ppa005742mg Prunus persica PRUPE_ppa005742mg N
Sb05g001500 Sorghum bicolor Sb05g001500 N 0.817
SELMODRAFT_432115 Selaginella moellendorffii SELMODRAFT_432115 N 0.724
Si032551m.g Setaria italica Si032551m.g N
Solyc07g043330.1 Solanum lycopersicum Solyc07g043330.1 N
Solyc10g074680.1 Solanum lycopersicum Solyc10g074680.1 N 0.900
TCM_017746 Theobroma cacao TCM_017746 N 0.942
Traes_2AS_455BD2CA1 Triticum aestivum Traes_2AS_455BD2CA1 N
Traes_4BS_A05D3DC53 Triticum aestivum Traes_4BS_A05D3DC53 N 0.803
Traes_4DS_2CE9E3235 Triticum aestivum Traes_4DS_2CE9E3235 N 0.806
Traes_5BL_C02570726 Triticum aestivum Traes_5BL_C02570726 N 0.805
Traes_5DL_3EC609F62 Triticum aestivum Traes_5DL_3EC609F62 N 0.817
VIT_03s0017g01660 Vitis vinifera VIT_03s0017g01660 N
SCR Vitis vinifera VIT_08s0056g00050 N 0.941
Ca_09530 Cicer arietinum Ca_09530 N 0.900
Ca_11130 Cicer arietinum Ca_11130 N
Cla005525 Citrullus lanatus Cla005525 N
Cla012346 Citrullus lanatus Cla012346 N 0.908
Pm002956 Prunus mume Pm002956 N 0.920
Pm014866 Prunus mume Pm014866 N
29872.m000537 Ricinus communis 29872.m000537 N
30073.m002204 Ricinus communis 30073.m002204 N 0.944
cassava25218.valid.m1 Manihot esculenta cassava25218.valid.m1 N 0.953
cassava29451.valid.m1 Manihot esculenta cassava29451.valid.m1 N
cassava36326.valid.m1 Manihot esculenta cassava36326.valid.m1 N 0.942
Cucsa.002880 Cucumis sativus Cucsa.002880 N 0.905
Cucsa.180010 Cucumis sativus Cucsa.180010 N
gw1.165.95.1 Physcomitrella patens gw1.165.95.1 N
mgf012242m Mimulus guttatus mgf012242m N 0.897
Aquca_004_00566 Aquilegia coerulea Aquca_004_00566 N 0.880
Aquca_030_00364 Aquilegia coerulea Aquca_030_00364 N
Bostr.0697s0034 Boechera stricta Bostr.0697s0034 N 0.883
Bostr.25375s0003 Boechera stricta Bostr.25375s0003 N
Cagra.0562s0013 Capsella grandiflora Cagra.0562s0013 N 0.883
Cagra.6263s0002 Capsella grandiflora Cagra.6263s0002 N
Carubv10004949m.g Capsella rubella Carubv10004949m.g N
Carubv10016802m.g Capsella rubella Carubv10016802m.g N 0.883
Ciclev10011085m.g Citrus clementina Ciclev10011085m.g N 0.947
Ciclev10011732m.g Citrus clementina Ciclev10011732m.g N
Eucgr.A00903 Eucalyptus grandis Eucgr.A00903 N
Eucgr.K01320 Eucalyptus grandis Eucgr.K01320 N 0.905
evm.TU.supercontig_1018.1 Carica papaya evm.TU.supercontig_1018.1 N 0.928
evm.TU.supercontig_8.295 Carica papaya evm.TU.supercontig_8.295 N
gene13644-v1.0-hybrid Fragaria vesca gene13644-v1.0-hybrid N 0.914
gene24339-v1.0-hybrid Fragaria vesca gene24339-v1.0-hybrid N
Gorai.005G001300 Gossypium raimondii Gorai.005G001300 N 0.891
Gorai.006G236200 Gossypium raimondii Gorai.006G236200 N 0.908
Lus10040734.g Linum usitatissimum Lus10040734.g N 0.822
MDP0000269044 Malus domestica MDP0000269044 N
MDP0000287321 Malus domestica MDP0000287321 N
MDP0000289554 Malus domestica MDP0000289554 N
MDP0000397638 Malus domestica MDP0000397638 N 0.909
orange1.1g013903m.g Citrus sinensis orange1.1g013903m.g N
orange1.1g014896m.g Citrus sinensis orange1.1g014896m.g N 0.947
Pavir.J08573 Panicum virgatum Pavir.J08573 N 0.778
Pavir.J19041 Panicum virgatum Pavir.J19041 N
Pavir.J21588 Panicum virgatum Pavir.J21588 N 0.812
SapurV1A.0154s0180 Salix purpurea SapurV1A.0154s0180 N
SapurV1A.0208s0090 Salix purpurea SapurV1A.0208s0090 N 0.975
SapurV1A.0295s0450 Salix purpurea SapurV1A.0295s0450 N
SapurV1A.1165s0100 Salix purpurea SapurV1A.1165s0100 N 0.961
Thhalv10010179m.g Eutrema salsugineum Thhalv10010179m.g N 0.884
Thhalv10027784m.g Eutrema salsugineum Thhalv10027784m.g N
PK21090.1 Cannabis sativa PK21090.1 N
PK22310.1 Cannabis sativa PK22310.1 N 0.939
chr1.CM1255.400.nc Lotus japonicus chr1.CM1255.400.nc N 0.914
chr3.CM0460.360.nd Lotus japonicus chr3.CM0460.360.nd N