GSMUA_Achr3G05500_001 (Musa acuminata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 GSMUA_Achr3G05500_001 T254368_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr3P05500_001 MADS box 10 54

Links

Other MADS box family TFs
Other Musa acuminata TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.756
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.733
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.733
MDP0000846004 Malus domestica MDP0000846004 I 0.778
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.800
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.733
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.735
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.756
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.733
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.756
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.711
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.733
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.733
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.727
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.778
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.711
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.733
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.711
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.778
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.711
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.800
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.756
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.756
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.756
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.711
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.711
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.733
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.800
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.729
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.778
Ca_06495 Cicer arietinum Ca_06495 I 0.711
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.711
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.733
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.733
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.756
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.711
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.711
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.756
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.733
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.733
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.800
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.733
TCM_026842 Theobroma cacao TCM_026842 I 0.711
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.733
MDP0000925348 Malus domestica MDP0000925348 I 0.822
Ca_13275 Cicer arietinum Ca_13275 I 0.756
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.778
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.711
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.733
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.778
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.711
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.800
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.778
mgf026186m Mimulus guttatus mgf026186m I 0.727
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.711
30199.m000879 Ricinus communis 30199.m000879 I 0.800
Pm004396 Prunus mume Pm004396 I 0.800
Ca_08934 Cicer arietinum Ca_08934 I 0.711
orange1.1g038848m.g Citrus sinensis orange1.1g038848m.g N 0.711
GLYMA03G19880 Glycine max GLYMA03G19880 N 0.711
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.711
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N 0.844
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.711
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.778
GSMUA_Achr3G08500_001 Musa acuminata GSMUA_Achr3G08500_001 N 0.778
MTR_4g032260 Medicago truncatula MTR_4g032260 N 0.711
MTR_4g032290 Medicago truncatula MTR_4g032290 N 0.711
Ciclev10013876m.g Citrus clementina Ciclev10013876m.g N 0.711
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.711
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.711
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.723
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.733
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.711
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.733
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.711
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.733
evm.TU.supercontig_185.6 Carica papaya evm.TU.supercontig_185.6 N 0.731
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.711
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.711
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.733