gmeb1 (Danio rerio)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01342 (SAND) IPR000770 ENSDARG00000062060 T321664_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GMEB1
M02460_2.00 		Homo sapiens
NNVCGYNNN
NNNRCGBNN		 PBM
Weirauch et al.(2014)
pTH9026 		0.965 0.811
GMEB1
M02461_2.00 		Meleagris gallopavo
NNACGYNNN
NNNRCGTNN		 PBM
Weirauch et al.(2014)
pTH8318 		0.965 0.811
ENSMODG00000010947
M02463_2.00 		Monodelphis domestica
NNRCGYN
NRCGYNN		 PBM
Weirauch et al.(2014)
pTH8671 		0.965 0.811
GMEB1
M02465_2.00 		Pteropus vampyrus
NBACGYHN
NDRCGTVN		 PBM
Weirauch et al.(2014)
pTH9282 		0.965 0.811
GMEB1
M05737_2.00 		Homo sapiens
KKACGTAMNKTACGTAM
KTACGTAMNKTACGTMM		 SELEX
Yin et al.(2017)
GMEB1_FL_HT-SELEX 		0.965 0.811
GMEB1
M05738_2.00 		Homo sapiens
KNRCGTVRBBVCGYHN
NDRCGBVVYBACGYNM		 SELEX
Yin et al.(2017)
GMEB1_FL_Methyl-HT-SELEX 		0.965 0.811
Gmeb1
M00190_2.00 		Mus musculus
NNRCGYNNN
NNNRCGYNN		 PBM
Badis et al.(2009)
Gmeb1_1745 		0.965 0.797
gmeb1
M02468_2.00 		Xenopus tropicalis
NNRCGYNNN
NNNRCGYNN		 PBM
Weirauch et al.(2014)
pTH8745 		0.960 0.770
gmeb1.S
M02469_2.00 		Xenopus laevis
NKACGTVY
RBACGTMN		 PBM
Weirauch et al.(2014)
pTH9298 		0.960 0.757
GMEB2
M02458_2.00 		Anolis carolinensis
NNACGYANN
NNTRCGTNN		 PBM
Weirauch et al.(2014)
pTH9219 		0.947 0.716
Gmeb2
M00824_2.00 		Mus musculus
NNACGYNN
NNRCGTNN		 PBM
Weirauch et al.(2013)
pTH3084 		0.942 0.689
GMEB2
M03471_2.00 		Homo sapiens
YBACGYAM
KTRCGTVR		 SELEX
Jolma et al.(2013)
GMEB2_1 		0.942 0.689
GMEB2
M03472_2.00 		Homo sapiens
WACGTGSTYACGYW
WRCGTRASCACGTW		 SELEX
Jolma et al.(2013)
GMEB2_2 		0.942 0.689
GMEB2
M03473_2.00 		Homo sapiens
YACGTAACBBACGYA
TRCGTVVGTTACGTR		 SELEX
Jolma et al.(2013)
GMEB2_3 		0.942 0.689
GMEB2
M03474_2.00 		Homo sapiens
BKACGTAM
KTACGTMV		 SELEX
Jolma et al.(2013)
GMEB2_4 		0.942 0.689
GMEB2
M05735_2.00 		Homo sapiens
BYACGTAVSBTACGTRV
BYACGTAVSBTACGTRV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_HT-SELEX 		0.942 0.689
GMEB2
M05736_2.00 		Homo sapiens
BBACGYAMVBNACGYVV
BBRCGTNVBKTRCGTVV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_Methyl-HT-SELEX 		0.942 0.689
GMEB2
M02462_2.00 		Meleagris gallopavo
BBACGYH
DRCGTVV		 PBM
Weirauch et al.(2014)
pTH9211 		0.940 0.689
ENSCING00000003435
M02459_2.00 		Ciona intestinalis
NKACGTMVNN
NNBKACGTMN		 PBM
Weirauch et al.(2014)
pTH9356 		0.884 0.595
For this family, TFs with SR scores > 0.843 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000122476 SAND 70 144
ENSDARP00000125781 SAND 70 144

Links

Other SAND family TFs
Other Danio rerio TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.000
29900.m001628 Ricinus communis 29900.m001628 I 0.000
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.000
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.000
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.000
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.000
mgf006505m Mimulus guttatus mgf006505m I 0.000
mgf000047m Mimulus guttatus mgf000047m I 0.000
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.000
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.000
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.000
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.000
29814.m000741 Ricinus communis 29814.m000741 I 0.000
Cla019967 Citrullus lanatus Cla019967 I 0.000
Cla009854 Citrullus lanatus Cla009854 I 0.000
Cla002288 Citrullus lanatus Cla002288 I 0.000
Ca_19877 Cicer arietinum Ca_19877 I 0.000
Ca_00394 Cicer arietinum Ca_00394 I 0.000
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.000
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.000
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.000
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.000
PK27986.1 Cannabis sativa PK27986.1 I 0.000
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.000
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.000
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.000
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.000
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.000
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.000
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.000
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.000
MDP0000301451 Malus domestica MDP0000301451 I 0.000
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.000
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.000
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.000
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.000
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.000
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.000
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.000
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.000
TCM_029695 Theobroma cacao TCM_029695 I 0.000
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.000
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.000
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.000
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.000
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.000
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.000
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.000
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.000
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.000
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.000
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.000
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.000
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.000
BRADI2G16780 Brachypodium distachyon BRADI2G16780 I 0.000
Bra007407 Brassica rapa Bra007407 I 0.000
Bra003346 Brassica rapa Bra003346 I 0.000
Bo6g075950 Brassica oleracea Bo6g075950 I 0.000
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.000
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.000
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.000
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.000
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.000
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.000
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.000
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.000
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.000
OS05G0560600 Oryza sativa OS05G0560600 I 0.000
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.000
Si022565m.g Setaria italica Si022565m.g I 0.000
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.000
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.000
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.000
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.000
OBART05G25610 Oryza barthii OBART05G25610 I 0.000
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.000
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.000
TCM_042467 Theobroma cacao TCM_042467 N 0.000
Ca_02494 Cicer arietinum Ca_02494 N 0.000
Lus10025406.g Linum usitatissimum Lus10025406.g N 0.000
Lus10007273.g Linum usitatissimum Lus10007273.g N 0.000
Cucsa.195790 Cucumis sativus Cucsa.195790 N 0.000
mgf001239m Mimulus guttatus mgf001239m N 0.000
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.000