SapurV1A.0258s0090 (Salix purpurea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 SapurV1A.0258s0090 T334704_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.724 0.804
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.699 0.804
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.699 0.804
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.654 0.652
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.654 0.652
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.601 0.696
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SapurV1A.0258s0090.1.p Sox 160 205
SapurV1A.0258s0090.2.p Sox 113 158
SapurV1A.0258s0090.3.p Sox 104 149

Links

Other Sox family TFs
Other Salix purpurea TFs

532 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LOB Arabidopsis thaliana AT5G63090 D
AC233943.1_FG002 Zea mays AC233943.1_FG002 I
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I
LBD25 Arabidopsis thaliana AT3G27650 I
Bo2g144870 Brassica oleracea Bo2g144870 I
Bo3g104760 Brassica oleracea Bo3g104760 I
Bo7g085860 Brassica oleracea Bo7g085860 I
Bo9g008330 Brassica oleracea Bo9g008330 I
Bo9g017470 Brassica oleracea Bo9g017470 I
Bra025294 Brassica rapa Bra025294 I
Bra033019 Brassica rapa Bra033019 I
Bra035860 Brassica rapa Bra035860 I
Bra038606 Brassica rapa Bra038606 I
Bra039072 Brassica rapa Bra039072 I
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I
F775_25656 Aegilops tauschii F775_25656 I
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I
GLYMA04G36080 Glycine max GLYMA04G36080 I
GLYMA05G02530 Glycine max GLYMA05G02530 I
GLYMA05G08870 Glycine max GLYMA05G08870 I
GLYMA06G18861 Glycine max GLYMA06G18861 I
GLYMA16G07770 Glycine max GLYMA16G07770 I
GLYMA16G09720 Glycine max GLYMA16G09720 I
GLYMA17G09380 Glycine max GLYMA17G09380 I
GLYMA19G00390 Glycine max GLYMA19G00390 I
GLYMA19G12650 Glycine max GLYMA19G12650 I
LPERR01G04140 Leersia perrieri LPERR01G04140 I
MTR_3g077240 Medicago truncatula MTR_3g077240 I
MTR_4g105170 Medicago truncatula MTR_4g105170 I
MTR_6g005070 Medicago truncatula MTR_6g005070 I
MTR_6g005080 Medicago truncatula MTR_6g005080 I
MTR_7g033800 Medicago truncatula MTR_7g033800 I
OB01G14220 Oryza brachyantha OB01G14220 I
OBART01G04470 Oryza barthii OBART01G04470 I
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I
OMERI01G04420 Oryza meridionalis OMERI01G04420 I
ONIVA01G04930 Oryza nivara ONIVA01G04930 I
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I
OS01G0169400 Oryza sativa OS01G0169400 I
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I
Sb03g004590 Sorghum bicolor Sb03g004590 I
LOB Arabidopsis lyrata scaffold_802995.1 I
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I
Si002632m.g Setaria italica Si002632m.g I
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I
TCM_012190 Theobroma cacao TCM_012190 I
TCM_016952 Theobroma cacao TCM_016952 I
AS2 Vitis vinifera VIT_00s0340g00090 I
LBD25 Vitis vinifera VIT_14s0066g00680 I
LOB Vitis vinifera VIT_17s0000g09010 I
Ca_07463 Cicer arietinum Ca_07463 I
Ca_08824 Cicer arietinum Ca_08824 I
Ca_24372 Cicer arietinum Ca_24372 I
Cla003499 Citrullus lanatus Cla003499 I
Cla010600 Citrullus lanatus Cla010600 I
Cla017388 Citrullus lanatus Cla017388 I
Cla019510 Citrullus lanatus Cla019510 I
Pm015649 Prunus mume Pm015649 I
Pm024312 Prunus mume Pm024312 I
29917.m001993 Ricinus communis 29917.m001993 I
30147.m013890 Ricinus communis 30147.m013890 I
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I
cassava19770.m1 Manihot esculenta cassava19770.m1 I
cassava33952.m1 Manihot esculenta cassava33952.m1 I
cassava3724.m1 Manihot esculenta cassava3724.m1 I
Cucsa.011300 Cucumis sativus Cucsa.011300 I
Cucsa.098680 Cucumis sativus Cucsa.098680 I
Cucsa.196600 Cucumis sativus Cucsa.196600 I
Cucsa.339980 Cucumis sativus Cucsa.339980 I
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I
mgf003146m Mimulus guttatus mgf003146m I
mgf016361m Mimulus guttatus mgf016361m I
mgf024603m Mimulus guttatus mgf024603m I
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I
Carubv10018238m.g Capsella rubella Carubv10018238m.g I
Carubv10028397m.g Capsella rubella Carubv10028397m.g I
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I
Lus10022264.g Linum usitatissimum Lus10022264.g I
Lus10027676.g Linum usitatissimum Lus10027676.g I
Lus10039940.g Linum usitatissimum Lus10039940.g I
MDP0000130659 Malus domestica MDP0000130659 I
MDP0000254288 Malus domestica MDP0000254288 I
MDP0000643326 Malus domestica MDP0000643326 I
MDP0000848210 Malus domestica MDP0000848210 I
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I
Pavir.J38993 Panicum virgatum Pavir.J38993 I
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I
PK18922.1 Cannabis sativa PK18922.1 I
PK21510.1 Cannabis sativa PK21510.1 I
PK26472.1 Cannabis sativa PK26472.1 I
PK29334.1 Cannabis sativa PK29334.1 I
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I
GLYMA01G32340 Glycine max GLYMA01G32340 N