AMTR_s00012p00149750 (Amborella trichopoda)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 AMTR_s00012p00149750 T204375_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WUS
M06905_2.00 		Arabidopsis thaliana
TRAWTGAWTGA
TCAWTCAWTYA		 Dap-seq
OMalley et al.(2016)
WUS1_col_a 		0.779 0.719
WUS
M06906_2.00 		Arabidopsis thaliana
TGAWTGAWTGW
WCAWTCAWTCA		 Dap-seq
OMalley et al.(2016)
WUS1_colamp_a 		0.779 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN07797 Homeodomain 25 86

Links

Other Homeodomain family TFs
Other Amborella trichopoda TFs

453 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29815.m000499 Ricinus communis 29815.m000499 I 0.000
29822.m003500 Ricinus communis 29822.m003500 I 0.000
29983.m003123 Ricinus communis 29983.m003123 I 0.000
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.000
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.000
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.000
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.000
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.000
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.000
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.000
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.000
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.000
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.000
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.000
Bo12274s010 Brassica oleracea Bo12274s010 I 0.000
Bo1g158730 Brassica oleracea Bo1g158730 I 0.000
Bo2g005230 Brassica oleracea Bo2g005230 I 0.000
Bo2g012410 Brassica oleracea Bo2g012410 I 0.000
Bo2g042250 Brassica oleracea Bo2g042250 I 0.000
Bo3g002560 Brassica oleracea Bo3g002560 I 0.000
Bo3g010120 Brassica oleracea Bo3g010120 I 0.000
Bo4g034490 Brassica oleracea Bo4g034490 I 0.000
Bo9g165360 Brassica oleracea Bo9g165360 I 0.000
Bo9g181720 Brassica oleracea Bo9g181720 I 0.000
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.000
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.000
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.000
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.000
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.000
Bra005259 Brassica rapa Bra005259 I 0.000
Bra006285 Brassica rapa Bra006285 I 0.000
Bra008717 Brassica rapa Bra008717 I 0.000
Bra009510 Brassica rapa Bra009510 I 0.000
Bra018155 Brassica rapa Bra018155 I 0.000
Bra022687 Brassica rapa Bra022687 I 0.000
Bra023506 Brassica rapa Bra023506 I 0.000
Bra028820 Brassica rapa Bra028820 I 0.000
Bra039135 Brassica rapa Bra039135 I 0.000
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.000
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.000
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.000
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.000
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.000
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.000
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.000
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.000
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.000
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.000
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.000
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.000
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.000
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.000
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.000
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.000
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.000
cassava46810.m1 Manihot esculenta cassava46810.m1 I 0.000
Ca_10527 Cicer arietinum Ca_10527 I 0.000
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.000
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.000
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.000
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.000
Cla010510 Citrullus lanatus Cla010510 I 0.000
Cla018017 Citrullus lanatus Cla018017 I 0.000
Cla018641 Citrullus lanatus Cla018641 I 0.000
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.000
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.000
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.000
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.000
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.000
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.000
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.000
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.000
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.000
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.000
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.000
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.000
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.000
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.000
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.000
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.000
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.000
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.000
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.000
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.000
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.000
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.000
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.000
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.000
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.000
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.000
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.000
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.000
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.000
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.000
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.000
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.000
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.000
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.000
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.000
HAT7 Arabidopsis thaliana AT5G15150 I 0.000
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.000
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.000
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.000
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.000
MDP0000119544 Malus domestica MDP0000119544 I 0.000
MDP0000124827 Malus domestica MDP0000124827 I 0.000
MDP0000134241 Malus domestica MDP0000134241 I 0.000
MDP0000146339 Malus domestica MDP0000146339 I 0.000
MDP0000311522 Malus domestica MDP0000311522 I 0.000
MDP0000737128 Malus domestica MDP0000737128 I 0.000
MDP0000738604 Malus domestica MDP0000738604 I 0.000
MDP0000909160 Malus domestica MDP0000909160 I 0.000
mgf013301m Mimulus guttatus mgf013301m I 0.000
mgf019824m Mimulus guttatus mgf019824m I 0.000
mgf022748m Mimulus guttatus mgf022748m I 0.000
mgf025174m Mimulus guttatus mgf025174m I 0.000
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.000
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.000
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.000
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.000
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.000
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.000
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.000
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.000
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.000
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.000
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.000
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.000
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.000
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.000
PK15535.1 Cannabis sativa PK15535.1 I 0.000
PK20392.1 Cannabis sativa PK20392.1 D 0.000
Pm011328 Prunus mume Pm011328 I 0.000
Pm015861 Prunus mume Pm015861 I 0.000
Pm018314 Prunus mume Pm018314 I 0.000
Pm026270 Prunus mume Pm026270 I 0.000
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.000
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.000
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.000
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.000
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.000
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.000
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.000
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.000
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.000
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.000
SapurV1A.0118s0340 Salix purpurea SapurV1A.0118s0340 N 0.000
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.000
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.000
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.000
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.000
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.000
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.000
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.000
Si030983m.g Setaria italica Si030983m.g I 0.000
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.000
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.000
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.000
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.000
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.000
TCM_018470 Theobroma cacao TCM_018470 I 0.000
TCM_022391 Theobroma cacao TCM_022391 I 0.000
TCM_031644 Theobroma cacao TCM_031644 I 0.000
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.000
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.000
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.000
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.000
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.000
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.000
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.000
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.000
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.000
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.000
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.000