Brh_R001640 (Buceros rhinoceros)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00605 (IRF) IPR001346 Brh_R001640 T244518_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF2
M05545_2.00 		Homo sapiens
NGAAAVYGAAAS
STTTCRBTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_HT-SELEX 		0.971 0.971
IRF2
M02691_2.00 		Homo sapiens
SGAAAGYGAAASYNWWHH
DDWWNRSTTTCRCTTTCS		 SELEX
Mathelier et al.(2014)
MA0051.1 		0.971 0.971
IRF2
M09237_2.00 		Homo sapiens
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_HUMAN.H11MO.0.A 		0.971 0.971
IRF2
M09596_2.00 		Homo sapiens
NRAAVNRRAASB
VSTTYYNBTTYN		 Misc
Heinz et al.(2010)
Erythroblas-IRF2_GSE36985 		0.971 0.971
IRF2
M10892_2.00 		Homo sapiens
GAAAAGYGAAASY
RSTTTCRCTTTTC		 Transfac
Matys et al.(2006)
V$IRF2_01 		0.971 0.971
IRF2
M10893_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF2_Q6 		0.971 0.971
IRF2
M05546_2.00 		Homo sapiens
NGAAASYGAAAS
STTTCRSTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_Methyl-HT-SELEX 		0.971 0.971
Irf2
M00805_2.00 		Mus musculus
NDWNHGAAAV
BTTTCDNWHN		 PBM
Weirauch et al.(2013)
pTH2835 		0.952 0.952
Irf2
M09245_2.00 		Mus musculus
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_MOUSE.H11MO.0.B 		0.952 0.952
IRF1
M08142_2.00 		Homo sapiens
RWANNGAAASYGAAASYRNNN
NNNYRSTTTCRSTTTCNNTWY		 ChIP-seq
Mathelier et al.(2014)
MA0050.2 		0.781 0.781
IRF1
M09233_2.00 		Homo sapiens
NRAANNGAAASWGAAASHRN
NYDSTTTCWSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF1_HUMAN.H11MO.0.A 		0.781 0.781
Irf1
M09242_2.00 		Mus musculus
VRAANNGAAASYGAAASYVN
NBRSTTTCRSTTTCNNTTYB		 Misc
Kulakovskiy et al.(2013)
IRF1_MOUSE.H11MO.0.A 		0.781 0.781
IRF1
M09594_2.00 		Homo sapiens
GAAASTGAAASY
RSTTTCASTTTC		 Misc
Heinz et al.(2010)
PBMC-IRF1_GSE43036 		0.781 0.781
IRF1
M10879_2.00 		Homo sapiens
SAAAASYGAAASY
RSTTTCRSTTTTS		 Transfac
Matys et al.(2006)
V$IRF1_01 		0.781 0.781
IRF1
M10880_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF1_03 		0.781 0.781
IRF1
M10881_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF1_Q5 		0.781 0.781
IRF1
M10882_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF1_Q6 		0.781 0.781
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Brh_R001640 IRF 7 112

Links

Other IRF family TFs
Other Buceros rhinoceros TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27613.m000642 Ricinus communis 27613.m000642 N
29949.m000124 Ricinus communis 29949.m000124 N
AMTR_s00088p00161000 Amborella trichopoda AMTR_s00088p00161000 N
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N
Aquca_028_00248 Aquilegia coerulea Aquca_028_00248 N
Bo2g149670 Brassica oleracea Bo2g149670 N
Bo6g022330 Brassica oleracea Bo6g022330 N
Bo7g089080 Brassica oleracea Bo7g089080 N
Bo9g009240 Brassica oleracea Bo9g009240 N
Bo9g009260 Brassica oleracea Bo9g009260 N
Bostr.26675s0117 Boechera stricta Bostr.26675s0117 N
Bostr.5224s0004 Boechera stricta Bostr.5224s0004 N
Bra018860 Brassica rapa Bra018860 N
Bra020715 Brassica rapa Bra020715 N
Bra026077 Brassica rapa Bra026077 N
Bra036185 Brassica rapa Bra036185 N
Bra037509 Brassica rapa Bra037509 N
Cagra.2766s0005 Capsella grandiflora Cagra.2766s0005 N
Cagra.7055s0004 Capsella grandiflora Cagra.7055s0004 N
Carubv10008830m.g Capsella rubella Carubv10008830m.g N
Carubv10026289m.g Capsella rubella Carubv10026289m.g N
cassava10826.m1 Manihot esculenta cassava10826.m1 N
cassava34106.m1 Manihot esculenta cassava34106.m1 N
cassava34699.m1 Manihot esculenta cassava34699.m1 N
cassava8885.m1 Manihot esculenta cassava8885.m1 N
Ca_09786 Cicer arietinum Ca_09786 N
Ca_13855 Cicer arietinum Ca_13855 N
chr6.LjT11E14.20.nc Lotus japonicus chr6.LjT11E14.20.nc N
Ciclev10007927m.g Citrus clementina Ciclev10007927m.g N
Ciclev10014845m.g Citrus clementina Ciclev10014845m.g N
CIGR2 Oryza sativa OS07G0583600 N
Cla001429 Citrullus lanatus Cla001429 N
Cla004565 Citrullus lanatus Cla004565 N
Cucsa.042310 Cucumis sativus Cucsa.042310 N
Cucsa.120390 Cucumis sativus Cucsa.120390 N
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N
Eucgr.F03523 Eucalyptus grandis Eucgr.F03523 N
evm.TU.supercontig_12.194 Carica papaya evm.TU.supercontig_12.194 N
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N
gene03551-v1.0-hybrid Fragaria vesca gene03551-v1.0-hybrid N
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N
GLYMA02G46730 Glycine max GLYMA02G46730 N
GLYMA02G47640 Glycine max GLYMA02G47640 N
GLYMA08G43780 Glycine max GLYMA08G43780 N
GLYMA09G22110 Glycine max GLYMA09G22110 N
GLYMA14G01020 Glycine max GLYMA14G01020 N
GLYMA14G01960 Glycine max GLYMA14G01960 N
GLYMA18G09030 Glycine max GLYMA18G09030 N
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N
Gorai.002G096300 Gossypium raimondii Gorai.002G096300 N
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N
Gorai.009G446100 Gossypium raimondii Gorai.009G446100 N
LjSGA_018703.2 Lotus japonicus LjSGA_018703.2 N
Lus10003772.g Linum usitatissimum Lus10003772.g N
Lus10006369.g Linum usitatissimum Lus10006369.g N
Lus10012323.g Linum usitatissimum Lus10012323.g N
Lus10016596.g Linum usitatissimum Lus10016596.g N
MDP0000152670 Malus domestica MDP0000152670 N
MDP0000205236 Malus domestica MDP0000205236 N
MDP0000284679 Malus domestica MDP0000284679 N
MDP0000804652 Malus domestica MDP0000804652 N
MTR_3g056110 Medicago truncatula MTR_3g056110 N
MTR_5g094450 Medicago truncatula MTR_5g094450 N
MTR_5g097480 Medicago truncatula MTR_5g097480 N
orange1.1g009376m.g Citrus sinensis orange1.1g009376m.g N
PAT1 Arabidopsis lyrata scaffold_801100.1 N
PAT1 Arabidopsis thaliana AT5G48150 N
PDK_20s1411471g003 Phoenix dactylifera PDK_20s1411471g003 N
PGSC0003DMG400006132 Solanum tuberosum PGSC0003DMG400006132 N
PGSC0003DMG400022187 Solanum tuberosum PGSC0003DMG400022187 N
PK09018.1 Cannabis sativa PK09018.1 N
PK15082.1 Cannabis sativa PK15082.1 N
Pm012019 Prunus mume Pm012019 N
Pm015021 Prunus mume Pm015021 N
POPTR_0014s16230 Populus trichocarpa POPTR_0014s16230 N
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N
PRUPE_ppa004136mg Prunus persica PRUPE_ppa004136mg N
SapurV1A.0030s0420 Salix purpurea SapurV1A.0030s0420 N
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N
SCL5 Arabidopsis thaliana AT1G50600 N
SCL5 Arabidopsis lyrata fgenesh2_kg.1__4145__AT1G50600.1 N
SCL5 Populus trichocarpa POPTR_0001s37270 N
SCL5 Vitis vinifera VIT_19s0090g01740 N
Solyc07g047950.1 Solanum lycopersicum Solyc07g047950.1 N
Solyc07g065270.1 Solanum lycopersicum Solyc07g065270.1 N
TCM_002319 Theobroma cacao TCM_002319 N
TCM_030733 Theobroma cacao TCM_030733 N
Thhalv10004053m.g Eutrema salsugineum Thhalv10004053m.g N
Thhalv10011379m.g Eutrema salsugineum Thhalv10011379m.g N
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N