Pm024077 (Prunus mume)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pm024077 T333842_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.515 0.702
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.515 0.702
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm024077 Sox 175 243
Pm024077 Sox 278 344
Pm024077 Sox 406 474

Links

Other Sox family TFs
Other Prunus mume TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30190.m010807 Ricinus communis 30190.m010807 I 0.564
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.437
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.491
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.447
Bo1g037180 Brassica oleracea Bo1g037180 I 0.471
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.486
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.528
Bra013731 Brassica rapa Bra013731 I 0.471
Bra035256 Brassica rapa Bra035256 I 0.451
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.467
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.528
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.510
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.518
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.502
Ca_05811 Cicer arietinum Ca_05811 I 0.424
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.470
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.464
Cla011101 Citrullus lanatus Cla011101 I 0.578
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.556
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.586
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.539
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.504
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.625
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.525
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.494
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.562
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.437
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.488
HMGB13 Arabidopsis thaliana AT4G11080 D 0.515
HMGB6 Arabidopsis thaliana AT4G23800 I 0.532
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.427
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.565
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.553
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.572
MDP0000268093 Malus domestica MDP0000268093 I 0.546
mgf015439m Mimulus guttatus mgf015439m I 0.480
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.423
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.439
OB02G19930 Oryza brachyantha OB02G19930 N 0.429
OBART02G11160 Oryza barthii OBART02G11160 I 0.447
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.447
OLONG_021730 Oryza longistaminata OLONG_021730 N 0.434
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.417
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.447
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.449
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.447
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.453
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.487
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.501
PK10992.1 Cannabis sativa PK10992.1 I 0.519
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.584
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.590
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.741
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.614
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.461
Si017040m.g Setaria italica Si017040m.g I 0.439
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.503
TCM_016416 Theobroma cacao TCM_016416 I 0.567
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.495
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.496
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.555