SMAR012298 (Strigamia maritima)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 SMAR012298 T044941_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NEUROD1
M04148_2.00 		Homo sapiens
RMCATATGKYVNNNTAWTT
AAWTANNNBRMCATATGKY		 SELEX
Yin et al.(2017)
NEUROD1_FL_HT-SELEX 		0.873 0.865
NEUROD1
M08057_2.00 		Homo sapiens
NNVCAGATGGNNN
NNNCCATCTGBNN		 ChIP-seq
Mathelier et al.(2014)
MA1109.1 		0.873 0.865
NEUROD1
M08735_2.00 		Homo sapiens
RVCAGATGGY
RCCATCTGBY		 Misc
Kulakovskiy et al.(2013)
NDF1_HUMAN.H11MO.0.A 		0.873 0.865
Neurod1
M08764_2.00 		Mus musculus
RVCAGATGGY
RCCATCTGBY		 Misc
Kulakovskiy et al.(2013)
NDF1_MOUSE.H11MO.0.A 		0.873 0.865
Neurod1
M09474_2.00 		Mus musculus
RVCAGATGGY
RCCATCTGBY		 Misc
Heinz et al.(2010)
Islet-NeuroD1_GSE30298 		0.873 0.865
NEUROD1
M09873_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NEUROD_01 		0.873 0.865
NEUROD1
M09874_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NEUROD_02 		0.873 0.865
NEUROD1
M04149_2.00 		Homo sapiens
RVCATATGBYVYNBTAWTW
WAWTAVNRBRVCATATGBY		 SELEX
Yin et al.(2017)
NEUROD1_FL_Methyl-HT-SELEX 		0.873 0.865
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMAR012298-PA bHLH 48 100

Links

Other bHLH family TFs
Other Strigamia maritima TFs

224 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_03572 Aegilops tauschii F775_03572 N 0.000
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N 0.000
Aquca_002_01300 Aquilegia coerulea Aquca_002_01300 N 0.000
Aquca_091_00032 Aquilegia coerulea Aquca_091_00032 N 0.000
RGA1 Arabidopsis lyrata fgenesh2_kg.5__65__AT2G01570.1 N 0.000
RGL2 Arabidopsis lyrata fgenesh2_kg.3__292__AT3G03450.1 I 0.000
GAI Arabidopsis lyrata fgenesh2_kg.1__1634__AT1G14920.1 N 0.000
GAI Arabidopsis thaliana AT1G14920 N 0.000
RGA Arabidopsis thaliana AT2G01570 N 0.000
Bostr.7128s0107 Boechera stricta Bostr.7128s0107 N 0.000
Bostr.7903s0021 Boechera stricta Bostr.7903s0021 N 0.000
BRADI1G11090 Brachypodium distachyon BRADI1G11090 N 0.000
Bo7g078550 Brassica oleracea Bo7g078550 N 0.000
Bo9g070200 Brassica oleracea Bo9g070200 N 0.000
Bra017443 Brassica rapa Bra017443 N 0.000
Bra024875 Brassica rapa Bra024875 N 0.000
PK14700.1 Cannabis sativa PK14700.1 N 0.000
Cagra.3501s0003 Capsella grandiflora Cagra.3501s0003 N 0.000
Cagra.2235s0013 Capsella grandiflora Cagra.2235s0013 N 0.000
Carubv10018534m.g Capsella rubella Carubv10018534m.g N 0.000
Carubv10008833m.g Capsella rubella Carubv10008833m.g N 0.000
evm.TU.supercontig_2.240 Carica papaya evm.TU.supercontig_2.240 I 0.000
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.000
Ca_05046 Cicer arietinum Ca_05046 N 0.000
Ca_13295 Cicer arietinum Ca_13295 I 0.000
Cla003996 Citrullus lanatus Cla003996 N 0.000
Cla020062 Citrullus lanatus Cla020062 N 0.000
Ciclev10017466m.g Citrus clementina Ciclev10017466m.g N 0.000
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N 0.000
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N 0.000
orange1.1g043131m.g Citrus sinensis orange1.1g043131m.g N 0.000
Cucsa.006260 Cucumis sativus Cucsa.006260 N 0.000
Cucsa.280310 Cucumis sativus Cucsa.280310 N 0.000
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.000
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N 0.000
Thhalv10005482m.g Eutrema salsugineum Thhalv10005482m.g N 0.000
Thhalv10007323m.g Eutrema salsugineum Thhalv10007323m.g N 0.000
Thhalv10018436m.g Eutrema salsugineum Thhalv10018436m.g N 0.000
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.000
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.000
GLYMA05G27190 Glycine max GLYMA05G27190 N 0.000
GLYMA08G10140 Glycine max GLYMA08G10140 N 0.000
Gorai.002G177000 Gossypium raimondii Gorai.002G177000 N 0.000
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I 0.000
MLOC_67940 Hordeum vulgare MLOC_67940 N 0.000
LPERR03G26000 Leersia perrieri LPERR03G26000 N 0.000
Lus10017626.g Linum usitatissimum Lus10017626.g N 0.000
Lus10033583.g Linum usitatissimum Lus10033583.g N 0.000
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.000
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.000
MDP0000237978 Malus domestica MDP0000237978 N 0.000
MDP0000669451 Malus domestica MDP0000669451 I 0.000
cassava14484.m1 Manihot esculenta cassava14484.m1 N 0.000
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.000
MTR_3g065980 Medicago truncatula MTR_3g065980 N 0.000
mgf025772m Mimulus guttatus mgf025772m N 0.000
mgf008289m Mimulus guttatus mgf008289m N 0.000
OBART03G31370 Oryza barthii OBART03G31370 N 0.000
OB03G38380 Oryza brachyantha OB03G38380 N 0.000
ORGLA03G0290200 Oryza glaberrima ORGLA03G0290200 N 0.000
OGLUM03G31610 Oryza glumaepatula OGLUM03G31610 N 0.000
SLR1 Oryza indica BGIOSGA013420 N 0.000
OMERI03G27970 Oryza meridionalis OMERI03G27970 N 0.000
ONIVA03G32670 Oryza nivara ONIVA03G32670 N 0.000
OPUNC03G28530 Oryza punctata OPUNC03G28530 N 0.000
ORUFI03G32650 Oryza rufipogon ORUFI03G32650 N 0.000
SLR1 Oryza sativa OS03G0707600 N 0.000
Pavir.Ib04357 Panicum virgatum Pavir.Ib04357 N 0.000
Pavir.Ia00840 Panicum virgatum Pavir.Ia00840 N 0.000
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I 0.000
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.000
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N 0.000
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N 0.000
Pm006304 Prunus mume Pm006304 N 0.000
Pm014329 Prunus mume Pm014329 I 0.000
PRUPE_ppa005944mg Prunus persica PRUPE_ppa005944mg N 0.000
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.000
28677.m000055 Ricinus communis 28677.m000055 N 0.000
29692.m000540 Ricinus communis 29692.m000540 N 0.000
SapurV1A.0015s0210 Salix purpurea SapurV1A.0015s0210 N 0.000
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N 0.000
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N 0.000
Si039400m.g Setaria italica Si039400m.g N 0.000
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N 0.000
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N 0.000
Sb01g010660 Sorghum bicolor Sb01g010660 N 0.000
TCM_010965 Theobroma cacao TCM_010965 N 0.000
TCM_019165 Theobroma cacao TCM_019165 N 0.000
Traes_4BS_2EE4988CD Triticum aestivum Traes_4BS_2EE4988CD N 0.000
Traes_4DS_ADBA6E30A Triticum aestivum Traes_4DS_ADBA6E30A N 0.000
GAI1 Vitis vinifera VIT_01s0011g05260 N 0.000
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.000
GRMZM2G024973 Zea mays GRMZM2G024973 N 0.000
GRMZM2G144744 Zea mays GRMZM2G144744 N 0.000