CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.001G121700
(
Gossypium raimondii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Gorai.001G121700
T142987_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.001G121700.1
C2H2 ZF
283
304
FMCRKCGKTFAVKGDWRTHEKN
Gorai.001G121700.1
C2H2 ZF
303
329
KNCGKLWYCTCGSDFKHKRSLKDHIRS
Links
Other
C2H2 ZF
family TFs
Other
Gossypium raimondii
TFs
305 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00022p00243980
Amborella trichopoda
AMTR_s00022p00243980
N
0.772
AMTR_s00093p00164790
Amborella trichopoda
AMTR_s00093p00164790
N
0.758
Aquca_004_00109
Aquilegia coerulea
Aquca_004_00109
N
0.797
Aquca_006_00227
Aquilegia coerulea
Aquca_006_00227
N
0.797
Aquca_026_00228
Aquilegia coerulea
Aquca_026_00228
N
0.758
Aquca_040_00077
Aquilegia coerulea
Aquca_040_00077
N
0.797
NTT
Arabidopsis lyrata
fgenesh2_kg.5__2209__AT3G57670.1
N
0.772
WIP6
Arabidopsis thaliana
AT1G13290
N
0.758
WIP2
Arabidopsis thaliana
AT3G57670
N
0.772
Bostr.13671s0117
Boechera stricta
Bostr.13671s0117
N
0.758
Bostr.20903s0019
Boechera stricta
Bostr.20903s0019
N
0.772
BRADI1G36067
Brachypodium distachyon
BRADI1G36067
N
0.758
BRADI4G27770
Brachypodium distachyon
BRADI4G27770
N
0.761
Bo4g111000
Brassica oleracea
Bo4g111000
N
0.772
Bo5g015200
Brassica oleracea
Bo5g015200
N
0.758
Bo6g073120
Brassica oleracea
Bo6g073120
N
0.772
Bo8g092070
Brassica oleracea
Bo8g092070
N
0.772
Bra003295
Brassica rapa
Bra003295
N
0.772
Bra007346
Brassica rapa
Bra007346
N
0.770
Bra014612
Brassica rapa
Bra014612
N
0.772
Bra019822
Brassica rapa
Bra019822
N
0.758
PK03705.1
Cannabis sativa
PK03705.1
N
0.772
PK05257.1
Cannabis sativa
PK05257.1
N
0.797
Cagra.0210s0004
Capsella grandiflora
Cagra.0210s0004
N
0.772
Cagra.3501s0170
Capsella grandiflora
Cagra.3501s0170
N
0.758
Carubv10012013m.g
Capsella rubella
Carubv10012013m.g
N
0.758
Carubv10017428m.g
Capsella rubella
Carubv10017428m.g
N
0.772
evm.TU.contig_35924
Carica papaya
evm.TU.contig_35924
N
0.827
evm.TU.supercontig_1.215
Carica papaya
evm.TU.supercontig_1.215
N
0.758
evm.TU.supercontig_84.74
Carica papaya
evm.TU.supercontig_84.74
N
0.772
Ca_07051
Cicer arietinum
Ca_07051
N
0.803
Ca_07269
Cicer arietinum
Ca_07269
N
0.772
Ca_08435
Cicer arietinum
Ca_08435
N
0.758
Ca_16482
Cicer arietinum
Ca_16482
N
0.822
Ca_21713
Cicer arietinum
Ca_21713
N
0.782
Ca_24699
Cicer arietinum
Ca_24699
N
0.758
Cla000184
Citrullus lanatus
Cla000184
N
0.808
Cla002714
Citrullus lanatus
Cla002714
N
0.758
Cla008187
Citrullus lanatus
Cla008187
N
0.772
Cla008675
Citrullus lanatus
Cla008675
N
Cla015481
Citrullus lanatus
Cla015481
N
0.778
Ciclev10003648m.g
Citrus clementina
Ciclev10003648m.g
N
0.788
Ciclev10005189m.g
Citrus clementina
Ciclev10005189m.g
N
0.772
Ciclev10017716m.g
Citrus clementina
Ciclev10017716m.g
N
0.778
Ciclev10028757m.g
Citrus clementina
Ciclev10028757m.g
N
0.827
Ciclev10033535m.g
Citrus clementina
Ciclev10033535m.g
N
0.767
orange1.1g019587m.g
Citrus sinensis
orange1.1g019587m.g
N
0.778
orange1.1g037179m.g
Citrus sinensis
orange1.1g037179m.g
N
0.788
orange1.1g039549m.g
Citrus sinensis
orange1.1g039549m.g
N
0.827
orange1.1g040794m.g
Citrus sinensis
orange1.1g040794m.g
N
0.772
orange1.1g046329m.g
Citrus sinensis
orange1.1g046329m.g
N
0.767
Cucsa.050260
Cucumis sativus
Cucsa.050260
N
0.778
Cucsa.065460
Cucumis sativus
Cucsa.065460
N
0.784
Cucsa.199850
Cucumis sativus
Cucsa.199850
N
0.808
Cucsa.242970
Cucumis sativus
Cucsa.242970
N
0.772
Cucsa.248320
Cucumis sativus
Cucsa.248320
N
0.758
Cucsa.357260
Cucumis sativus
Cucsa.357260
N
0.772
Eucgr.A02400
Eucalyptus grandis
Eucgr.A02400
N
0.772
Eucgr.B03047
Eucalyptus grandis
Eucgr.B03047
N
0.758
Eucgr.B03870
Eucalyptus grandis
Eucgr.B03870
N
0.827
Eucgr.J00788
Eucalyptus grandis
Eucgr.J00788
N
0.782
Thhalv10006035m.g
Eutrema salsugineum
Thhalv10006035m.g
N
0.772
Thhalv10009489m.g
Eutrema salsugineum
Thhalv10009489m.g
N
0.758
gene03867-v1.0-hybrid
Fragaria vesca
gene03867-v1.0-hybrid
N
0.767
gene14361-v1.0-hybrid
Fragaria vesca
gene14361-v1.0-hybrid
N
0.772
gene20598-v1.0-hybrid
Fragaria vesca
gene20598-v1.0-hybrid
N
0.778
gene22042-v1.0-hybrid
Fragaria vesca
gene22042-v1.0-hybrid
N
0.821
GLYMA01G22120
Glycine max
GLYMA01G22120
N
0.758
GLYMA02G10970
Glycine max
GLYMA02G10970
N
0.758
GLYMA02G31270
Glycine max
GLYMA02G31270
N
0.772
GLYMA08G16390
Glycine max
GLYMA08G16390
N
0.802
GLYMA10G34770
Glycine max
GLYMA10G34770
N
0.758
GLYMA11G19060
Glycine max
GLYMA11G19060
N
0.827
GLYMA12G09400
Glycine max
GLYMA12G09400
N
0.827
GLYMA12G30930
Glycine max
GLYMA12G30930
N
0.827
GLYMA12G36660
Glycine max
GLYMA12G36660
N
0.802
GLYMA13G27371
Glycine max
GLYMA13G27371
N
0.802
GLYMA13G39370
Glycine max
GLYMA13G39370
N
0.827
GLYMA15G42870
Glycine max
GLYMA15G42870
N
0.802
GLYMA19G32430
Glycine max
GLYMA19G32430
N
0.772
GLYMA20G32750
Glycine max
GLYMA20G32750
N
0.758
Gorai.002G152600
Gossypium raimondii
Gorai.002G152600
N
0.772
Gorai.003G089200
Gossypium raimondii
Gorai.003G089200
N
0.772
Gorai.004G037000
Gossypium raimondii
Gorai.004G037000
N
0.778
Gorai.004G065400
Gossypium raimondii
Gorai.004G065400
N
0.778
Gorai.006G111400
Gossypium raimondii
Gorai.006G111400
N
0.827
Gorai.006G138700
Gossypium raimondii
Gorai.006G138700
N
0.778
Gorai.007G177300
Gossypium raimondii
Gorai.007G177300
N
0.778
Gorai.010G039600
Gossypium raimondii
Gorai.010G039600
N
0.788
Gorai.013G080100
Gossypium raimondii
Gorai.013G080100
N
0.758
Gorai.013G250800
Gossypium raimondii
Gorai.013G250800
N
0.782
MLOC_54308
Hordeum vulgare
MLOC_54308
N
0.761
MLOC_65351
Hordeum vulgare
MLOC_65351
N
0.782
LPERR06G17470
Leersia perrieri
LPERR06G17470
N
0.758
LPERR09G03450
Leersia perrieri
LPERR09G03450
N
0.761
Lus10004887.g
Linum usitatissimum
Lus10004887.g
N
0.803
Lus10020597.g
Linum usitatissimum
Lus10020597.g
N
0.803
Lus10021700.g
Linum usitatissimum
Lus10021700.g
N
0.758
Lus10029525.g
Linum usitatissimum
Lus10029525.g
N
0.811
Lus10031271.g
Linum usitatissimum
Lus10031271.g
N
0.797
Lus10031838.g
Linum usitatissimum
Lus10031838.g
N
0.797
Lus10035044.g
Linum usitatissimum
Lus10035044.g
N
0.758
Lus10039613.g
Linum usitatissimum
Lus10039613.g
N
0.811
chr1.CM0318.720.nd
Lotus japonicus
chr1.CM0318.720.nd
N
0.772
chr2.CM1731.90.nc
Lotus japonicus
chr2.CM1731.90.nc
N
0.758
chr3.CM1144.10.nc
Lotus japonicus
chr3.CM1144.10.nc
N
0.821
MDP0000131949
Malus domestica
MDP0000131949
N
0.827
MDP0000142494
Malus domestica
MDP0000142494
N
0.789
MDP0000144266
Malus domestica
MDP0000144266
N
0.790
MDP0000300013
Malus domestica
MDP0000300013
N
0.827
MDP0000303483
Malus domestica
MDP0000303483
N
0.758
MDP0000403797
Malus domestica
MDP0000403797
N
0.778
MDP0000573922
Malus domestica
MDP0000573922
N
0.786
MDP0000580545
Malus domestica
MDP0000580545
N
0.778
MDP0000601705
Malus domestica
MDP0000601705
N
0.772
MDP0000899280
Malus domestica
MDP0000899280
N
0.758
cassava13451.valid.m1
Manihot esculenta
cassava13451.valid.m1
N
0.827
cassava16214.m1
Manihot esculenta
cassava16214.m1
N
0.821
cassava34009.m1
Manihot esculenta
cassava34009.m1
N
0.782
cassava35956.valid.m1
Manihot esculenta
cassava35956.valid.m1
N
0.772
cassava39829.m1
Manihot esculenta
cassava39829.m1
N
0.802
cassava41737.m1
Manihot esculenta
cassava41737.m1
N
0.772
cassava44390.m1
Manihot esculenta
cassava44390.m1
N
0.788
cassava46219.m1
Manihot esculenta
cassava46219.m1
N
0.758
cassava5227.m1
Manihot esculenta
cassava5227.m1
N
0.782
MTR_1g093095
Medicago truncatula
MTR_1g093095
N
0.758
mgf019910m
Mimulus guttatus
mgf019910m
N
mgf022319m
Mimulus guttatus
mgf022319m
N
0.778
GSMUA_Achr11G18950_001
Musa acuminata
GSMUA_Achr11G18950_001
N
GSMUA_Achr3G03850_001
Musa acuminata
GSMUA_Achr3G03850_001
N
0.802
GSMUA_Achr3G11050_001
Musa acuminata
GSMUA_Achr3G11050_001
N
0.782
GSMUA_Achr3G11870_001
Musa acuminata
GSMUA_Achr3G11870_001
N
0.788
GSMUA_Achr4G01560_001
Musa acuminata
GSMUA_Achr4G01560_001
N
0.811
GSMUA_Achr5G26210_001
Musa acuminata
GSMUA_Achr5G26210_001
N
GSMUA_Achr6G01410_001
Musa acuminata
GSMUA_Achr6G01410_001
N
0.761
GSMUA_Achr6G03470_001
Musa acuminata
GSMUA_Achr6G03470_001
N
0.758
GSMUA_Achr8G25650_001
Musa acuminata
GSMUA_Achr8G25650_001
N
GSMUA_Achr9G12600_001
Musa acuminata
GSMUA_Achr9G12600_001
N
0.802
GSMUA_AchrUn_randomG20320_001
Musa acuminata
GSMUA_AchrUn_randomG20320_001
N
0.772
GSMUA_AchrUn_randomG22660_001
Musa acuminata
GSMUA_AchrUn_randomG22660_001
N
0.778
OBART06G20890
Oryza barthii
OBART06G20890
N
0.782
OBART09G03640
Oryza barthii
OBART09G03640
N
OB06G28740
Oryza brachyantha
OB06G28740
N
0.758
ORGLA06G0173600
Oryza glaberrima
ORGLA06G0173600
N
0.758
ORGLA09G0176200
Oryza glaberrima
ORGLA09G0176200
N
OGLUM06G22000
Oryza glumaepatula
OGLUM06G22000
N
0.758
OGLUM09G04400
Oryza glumaepatula
OGLUM09G04400
N
OGLUM09G05550
Oryza glumaepatula
OGLUM09G05550
N
0.761
BGIOSGA023262
Oryza indica
BGIOSGA023262
N
0.758
BGIOSGA030081
Oryza indica
BGIOSGA030081
N
BGIOSGA030484
Oryza indica
BGIOSGA030484
N
0.761
OMERI09G02890
Oryza meridionalis
OMERI09G02890
N
OMERI09G03940
Oryza meridionalis
OMERI09G03940
N
0.761
ONIVA02G14580
Oryza nivara
ONIVA02G14580
N
ONIVA06G24670
Oryza nivara
ONIVA06G24670
N
0.758
ONIVA08G08420
Oryza nivara
ONIVA08G08420
N
0.761
OPUNC06G19020
Oryza punctata
OPUNC06G19020
N
0.758
OPUNC09G03280
Oryza punctata
OPUNC09G03280
N
OPUNC09G04260
Oryza punctata
OPUNC09G04260
N
0.761
ORUFI06G22350
Oryza rufipogon
ORUFI06G22350
N
0.758
ORUFI09G04060
Oryza rufipogon
ORUFI09G04060
N
ORUFI09G05390
Oryza rufipogon
ORUFI09G05390
N
0.761
OS06G0612300
Oryza sativa
OS06G0612300
N
0.758
OS09G0307400
Oryza sativa
OS09G0307400
N
0.761
Pavir.Ba03009
Panicum virgatum
Pavir.Ba03009
N
0.761
Pavir.Db00765
Panicum virgatum
Pavir.Db00765
N
0.758
e_gw1.203.23.1
Physcomitrella patens
e_gw1.203.23.1
N
0.788
gw1.359.34.1
Physcomitrella patens
gw1.359.34.1
N
0.788
POPTR_0001s27490
Populus trichocarpa
POPTR_0001s27490
N
0.802
POPTR_0002s09840
Populus trichocarpa
POPTR_0002s09840
N
0.798
POPTR_0003s20400
Populus trichocarpa
POPTR_0003s20400
N
0.788
POPTR_0004s19460
Populus trichocarpa
POPTR_0004s19460
N
0.827
POPTR_0009s06700
Populus trichocarpa
POPTR_0009s06700
N
0.802
POPTR_0009s14590
Populus trichocarpa
POPTR_0009s14590
N
0.827
POPTR_0010s13910
Populus trichocarpa
POPTR_0010s13910
N
0.758
POPTR_0016s05310
Populus trichocarpa
POPTR_0016s05310
N
0.772
Pm000471
Prunus mume
Pm000471
N
0.778
Pm001374
Prunus mume
Pm001374
N
0.827
Pm025853
Prunus mume
Pm025853
N
0.772
Pm029018
Prunus mume
Pm029018
N
0.758
PRUPE_ppa008185mg
Prunus persica
PRUPE_ppa008185mg
N
0.772
PRUPE_ppa020013m2g
Prunus persica
PRUPE_ppa020013m2g
N
0.758
PRUPE_ppa023619mg
Prunus persica
PRUPE_ppa023619mg
N
0.827
PRUPE_ppa024429mg
Prunus persica
PRUPE_ppa024429mg
N
0.778
27810.m000651
Ricinus communis
27810.m000651
N
0.772
29908.m006047
Ricinus communis
29908.m006047
N
0.788
30055.m001542
Ricinus communis
30055.m001542
N
0.827
30061.m000294
Ricinus communis
30061.m000294
N
0.802
30169.m006417
Ricinus communis
30169.m006417
N
0.788
SapurV1A.0018s0090
Salix purpurea
SapurV1A.0018s0090
N
0.772
SapurV1A.0027s0280
Salix purpurea
SapurV1A.0027s0280
N
0.782
SapurV1A.0080s0360
Salix purpurea
SapurV1A.0080s0360
N
0.827
SapurV1A.0219s0040
Salix purpurea
SapurV1A.0219s0040
N
0.803
SapurV1A.0445s0120
Salix purpurea
SapurV1A.0445s0120
N
0.786
SapurV1A.0445s0140
Salix purpurea
SapurV1A.0445s0140
N
0.786
SELMODRAFT_110681
Selaginella moellendorffii
SELMODRAFT_110681
N
0.782
SELMODRAFT_128378
Selaginella moellendorffii
SELMODRAFT_128378
N
0.782
SELMODRAFT_36986
Selaginella moellendorffii
SELMODRAFT_36986
N
0.758
SELMODRAFT_36987
Selaginella moellendorffii
SELMODRAFT_36987
N
0.758
SELMODRAFT_57106
Selaginella moellendorffii
SELMODRAFT_57106
N
0.758
SELMODRAFT_57114
Selaginella moellendorffii
SELMODRAFT_57114
N
0.758
Si006616m.g
Setaria italica
Si006616m.g
N
0.758
Si030360m.g
Setaria italica
Si030360m.g
N
0.761
Solyc01g087050.2
Solanum lycopersicum
Solyc01g087050.2
N
0.811
Solyc05g009770.1
Solanum lycopersicum
Solyc05g009770.1
N
Solyc11g062060.1
Solanum lycopersicum
Solyc11g062060.1
N
0.778
PGSC0003DMG400006808
Solanum tuberosum
PGSC0003DMG400006808
N
0.811
PGSC0003DMG400007112
Solanum tuberosum
PGSC0003DMG400007112
N
0.797
PGSC0003DMG400013609
Solanum tuberosum
PGSC0003DMG400013609
N
0.778
PGSC0003DMG400030271
Solanum tuberosum
PGSC0003DMG400030271
N
0.772
PGSC0003DMG400046144
Solanum tuberosum
PGSC0003DMG400046144
N
Sb02g020840
Sorghum bicolor
Sb02g020840
N
0.761
Sb10g024040
Sorghum bicolor
Sb10g024040
N
0.758
TCM_005892
Theobroma cacao
TCM_005892
N
0.802
TCM_011858
Theobroma cacao
TCM_011858
N
0.758
TCM_024788
Theobroma cacao
TCM_024788
N
0.772
TCM_034881
Theobroma cacao
TCM_034881
N
0.788
TCM_040610
Theobroma cacao
TCM_040610
N
0.788
TCM_041441
Theobroma cacao
TCM_041441
N
0.827
Traes_5BL_46BDE583B
Triticum aestivum
Traes_5BL_46BDE583B
N
0.761
Traes_5DL_98FA0887C
Triticum aestivum
Traes_5DL_98FA0887C
N
0.761
Traes_7AL_1070DBD71
Triticum aestivum
Traes_7AL_1070DBD71
N
0.782
TRIUR3_23735
Triticum urartu
TRIUR3_23735
N
0.782
TRIUR3_30537
Triticum urartu
TRIUR3_30537
N
0.761
DOT5
Vitis vinifera
VIT_01s0011g03100
N
0.758
VIT_06s0004g01870
Vitis vinifera
VIT_06s0004g01870
N
WIP3
Vitis vinifera
VIT_06s0080g00270
N
0.827
NTT
Vitis vinifera
VIT_08s0007g08070
N
0.772
TT1
Vitis vinifera
VIT_18s0001g05860
N
0.788
GRMZM2G061545
Zea mays
GRMZM2G061545
N
0.782
GRMZM2G150011
Zea mays
GRMZM2G150011
N
0.761
GRMZM2G435357
Zea mays
GRMZM2G435357
N
0.758
GRMZM2G436344
Zea mays
GRMZM2G436344
N
0.758