Pavir.J06328 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J06328 T143407_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.827 0.930
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.827 0.930
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J06328.1.p C2H2 ZF 127 149
Pavir.J06328.1.p C2H2 ZF 149 175

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I
C2H2 Arabidopsis lyrata scaffold_600374.1 I
AZF3 Arabidopsis lyrata scaffold_800768.1 I
ZAT1 Arabidopsis thaliana AT1G02030 D
ZAT10 Arabidopsis thaliana AT1G27730 D
ZAT4 Arabidopsis thaliana AT2G45120 D
AZF2 Arabidopsis thaliana AT3G19580 D
ZAT9 Arabidopsis thaliana AT3G60580 D
AT5G03510 Arabidopsis thaliana AT5G03510 D
ZAT6 Arabidopsis thaliana AT5G04340 D
AZF3 Arabidopsis thaliana AT5G43170 I
AZF1 Arabidopsis thaliana AT5G67450 D
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I
Bo1g081350 Brassica oleracea Bo1g081350 I
Bo1g113530 Brassica oleracea Bo1g113530 I
Bo2g168030 Brassica oleracea Bo2g168030 I
Bo3g037560 Brassica oleracea Bo3g037560 I
Bo3g142840 Brassica oleracea Bo3g142840 I
Bo4g030570 Brassica oleracea Bo4g030570 I
Bo4g104940 Brassica oleracea Bo4g104940 I
Bo4g186920 Brassica oleracea Bo4g186920 I
Bo4g195370 Brassica oleracea Bo4g195370 I
Bo5g052290 Brassica oleracea Bo5g052290 I
Bo5g113850 Brassica oleracea Bo5g113850 I
Bo6g077190 Brassica oleracea Bo6g077190 I
Bo7g048650 Brassica oleracea Bo7g048650 I
Bo7g065200 Brassica oleracea Bo7g065200 I
Bo8g095300 Brassica oleracea Bo8g095300 I
Bo9g019120 Brassica oleracea Bo9g019120 I
Bo9g181170 Brassica oleracea Bo9g181170 I
Bra000372 Brassica rapa Bra000372 I
Bra003422 Brassica rapa Bra003422 I
Bra007545 Brassica rapa Bra007545 I
Bra009464 Brassica rapa Bra009464 I
Bra010922 Brassica rapa Bra010922 I
Bra012914 Brassica rapa Bra012914 I
Bra014483 Brassica rapa Bra014483 I
Bra017188 Brassica rapa Bra017188 I
Bra018817 Brassica rapa Bra018817 I
Bra022436 Brassica rapa Bra022436 I
Bra029985 Brassica rapa Bra029985 I
Bra031834 Brassica rapa Bra031834 I
Bra032845 Brassica rapa Bra032845 I
Bra033666 Brassica rapa Bra033666 I
Bra037845 Brassica rapa Bra037845 I
Bra038219 Brassica rapa Bra038219 I
Bra040325 Brassica rapa Bra040325 I
PK10188.1 Cannabis sativa PK10188.1 I
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I
Carubv10001868m.g Capsella rubella Carubv10001868m.g I
Carubv10014391m.g Capsella rubella Carubv10014391m.g I
Carubv10017660m.g Capsella rubella Carubv10017660m.g I
Carubv10023569m.g Capsella rubella Carubv10023569m.g I
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I
Ca_01586 Cicer arietinum Ca_01586 I
Ca_05641 Cicer arietinum Ca_05641 I
Ca_18364 Cicer arietinum Ca_18364 I
Ca_23672 Cicer arietinum Ca_23672 I
Cla001400 Citrullus lanatus Cla001400 I
Cla022966 Citrullus lanatus Cla022966 I
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I
Cucsa.219210 Cucumis sativus Cucsa.219210 I
Cucsa.352740 Cucumis sativus Cucsa.352740 I
Cucsa.395710 Cucumis sativus Cucsa.395710 I
Eucgr.A01232 Eucalyptus grandis Eucgr.A01232 I
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I
gene13959-v1.0-hybrid Fragaria vesca gene13959-v1.0-hybrid I
GLYMA01G18606 Glycine max GLYMA01G18606 I
GLYMA01G32981 Glycine max GLYMA01G32981 I
GLYMA03G03950 Glycine max GLYMA03G03950 I
GLYMA04G04760 Glycine max GLYMA04G04760 I
GLYMA06G04840 Glycine max GLYMA06G04840 I
GLYMA10G40400 Glycine max GLYMA10G40400 I
GLYMA14G09760 Glycine max GLYMA14G09760 I
GLYMA17G35430 Glycine max GLYMA17G35430 I
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I
Gorai.010G202400 Gossypium raimondii Gorai.010G202400 I
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I
MLOC_51405 Hordeum vulgare MLOC_51405 I
MLOC_54674 Hordeum vulgare MLOC_54674 I
LPERR03G21480 Leersia perrieri LPERR03G21480 I
Lus10009278.g Linum usitatissimum Lus10009278.g I
Lus10015888.g Linum usitatissimum Lus10015888.g I
Lus10024428.g Linum usitatissimum Lus10024428.g I
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I
MDP0000198015 Malus domestica MDP0000198015 I
MDP0000319225 Malus domestica MDP0000319225 I
MDP0000573176 Malus domestica MDP0000573176 I
MDP0000762756 Malus domestica MDP0000762756 I
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I
cassava14164.m1 Manihot esculenta cassava14164.m1 I
cassava19892.m1 Manihot esculenta cassava19892.m1 I
cassava21316.m1 Manihot esculenta cassava21316.m1 I
cassava32957.m1 Manihot esculenta cassava32957.m1 I
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I
MTR_1g018420 Medicago truncatula MTR_1g018420 I
MTR_1g106730 Medicago truncatula MTR_1g106730 I
MTR_3g102980 Medicago truncatula MTR_3g102980 I
MTR_4g027440 Medicago truncatula MTR_4g027440 I
mgf006006m Mimulus guttatus mgf006006m I
mgf017082m Mimulus guttatus mgf017082m I
mgf021094m Mimulus guttatus mgf021094m I
mgf021789m Mimulus guttatus mgf021789m I
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I
GSMUA_Achr1G01260_001 Musa acuminata GSMUA_Achr1G01260_001 I
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I
GSMUA_AchrUn_randomG07580_001 Musa acuminata GSMUA_AchrUn_randomG07580_001 I
OBART02G26700 Oryza barthii OBART02G26700 I
OBART04G21020 Oryza barthii OBART04G21020 I
OB03G42170 Oryza brachyantha OB03G42170 I
OB04G28040 Oryza brachyantha OB04G28040 I
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I
BGIOSGA008755 Oryza indica BGIOSGA008755 I
BGIOSGA016894 Oryza indica BGIOSGA016894 I
OLONG_016061 Oryza longistaminata OLONG_016061 I
OMERI02G26030 Oryza meridionalis OMERI02G26030 I
OMERI04G17450 Oryza meridionalis OMERI04G17450 I
ONIVA02G29150 Oryza nivara ONIVA02G29150 I
ONIVA04G19260 Oryza nivara ONIVA04G19260 I
OPUNC04G18700 Oryza punctata OPUNC04G18700 I
OPUNC12G15600 Oryza punctata OPUNC12G15600 I
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I
OS02G0659500 Oryza sativa OS02G0659500 I
OS04G0552700 Oryza sativa OS04G0552700 I
OS12G0583700 Oryza sativa OS12G0583700 I
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I
Pm005390 Prunus mume Pm005390 I
Pm021284 Prunus mume Pm021284 I
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I
28152.m000908 Ricinus communis 28152.m000908 I
29661.m000908 Ricinus communis 29661.m000908 I
30147.m014242 Ricinus communis 30147.m014242 I
30170.m013751 Ricinus communis 30170.m013751 I
30174.m008818 Ricinus communis 30174.m008818 I
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I
Si010615m.g Setaria italica Si010615m.g I
Si023013m.g Setaria italica Si023013m.g I
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I
PGSC0003DMG400008327 Solanum tuberosum PGSC0003DMG400008327 I
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I
PGSC0003DMG400045547 Solanum tuberosum PGSC0003DMG400045547 I
TCM_000780 Theobroma cacao TCM_000780 I
TCM_007214 Theobroma cacao TCM_007214 I
TCM_034720 Theobroma cacao TCM_034720 I
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I
TRIUR3_29692 Triticum urartu TRIUR3_29692 I
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I
GRMZM2G170520 Zea mays GRMZM2G170520 I
GRMZM2G455889 Zea mays GRMZM2G455889 I