evm.TU.supercontig_2.240 (Carica papaya)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 evm.TU.supercontig_2.240 T202519_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RGL2
M02031_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Weirauch et al.(2014)
pTH8681 		0.703 0.703
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_2.240 GRAS 243 591

Links

Other GRAS family TFs
Other Carica papaya TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_03572 Aegilops tauschii F775_03572 N 0.722
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N 0.771
Aquca_002_01300 Aquilegia coerulea Aquca_002_01300 N 0.714
Aquca_091_00032 Aquilegia coerulea Aquca_091_00032 N 0.753
RGA1 Arabidopsis lyrata fgenesh2_kg.5__65__AT2G01570.1 N 0.832
RGL2 Arabidopsis lyrata fgenesh2_kg.3__292__AT3G03450.1 I 0.712
GAI Arabidopsis lyrata fgenesh2_kg.1__1634__AT1G14920.1 N 0.839
GAI Arabidopsis thaliana AT1G14920 N 0.839
RGA Arabidopsis thaliana AT2G01570 N 0.835
Bostr.7903s0021 Boechera stricta Bostr.7903s0021 N 0.876
Bostr.7128s0107 Boechera stricta Bostr.7128s0107 N 0.815
Bostr.19046s0061 Boechera stricta Bostr.19046s0061 I 0.700
BRADI1G11090 Brachypodium distachyon BRADI1G11090 N 0.723
Bo9g070200 Brassica oleracea Bo9g070200 N 0.742
Bo7g078550 Brassica oleracea Bo7g078550 N 0.835
Bra024875 Brassica rapa Bra024875 N 0.838
Bra017443 Brassica rapa Bra017443 N 0.749
PK14700.1 Cannabis sativa PK14700.1 N 0.880
Cagra.2235s0013 Capsella grandiflora Cagra.2235s0013 N 0.844
Cagra.3501s0003 Capsella grandiflora Cagra.3501s0003 N 0.839
Carubv10008833m.g Capsella rubella Carubv10008833m.g N 0.815
Carubv10018534m.g Capsella rubella Carubv10018534m.g N 0.821
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.759
Ca_05046 Cicer arietinum Ca_05046 N 0.847
Ca_13295 Cicer arietinum Ca_13295 I 0.750
Cla020062 Citrullus lanatus Cla020062 N 0.793
Cla003996 Citrullus lanatus Cla003996 N 0.866
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N 0.789
Ciclev10017466m.g Citrus clementina Ciclev10017466m.g N 0.816
orange1.1g043131m.g Citrus sinensis orange1.1g043131m.g N 0.844
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N 0.789
Cucsa.280310 Cucumis sativus Cucsa.280310 N 0.863
Cucsa.006260 Cucumis sativus Cucsa.006260 N 0.790
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.762
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N 0.841
Thhalv10007323m.g Eutrema salsugineum Thhalv10007323m.g N 0.818
Thhalv10005482m.g Eutrema salsugineum Thhalv10005482m.g N 0.846
Thhalv10018436m.g Eutrema salsugineum Thhalv10018436m.g N 0.706
GLYMA08G10140 Glycine max GLYMA08G10140 N 0.817
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.790
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.801
GLYMA05G27190 Glycine max GLYMA05G27190 N 0.847
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I 0.758
Gorai.002G177000 Gossypium raimondii Gorai.002G177000 N 0.916
MLOC_67940 Hordeum vulgare MLOC_67940 N 0.700
Lus10009133.g Linum usitatissimum Lus10009133.g N 0.749
Lus10017626.g Linum usitatissimum Lus10017626.g N 0.784
Lus10033583.g Linum usitatissimum Lus10033583.g N 0.757
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.772
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.772
MDP0000237978 Malus domestica MDP0000237978 N 0.862
MDP0000669451 Malus domestica MDP0000669451 I 0.804
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.794
cassava15077.m1 Manihot esculenta cassava15077.m1 N 0.908
cassava14484.m1 Manihot esculenta cassava14484.m1 N 0.922
MTR_3g065980 Medicago truncatula MTR_3g065980 N 0.772
mgf008289m Mimulus guttatus mgf008289m N 0.803
mgf025772m Mimulus guttatus mgf025772m N 0.749
SLR1 Oryza sativa OS03G0707600 N 0.729
Pavir.Ib04357 Panicum virgatum Pavir.Ib04357 N 0.738
Pavir.Ia00840 Panicum virgatum Pavir.Ia00840 N 0.738
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I 0.810
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.781
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N 0.899
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N 0.919
Pm006304 Prunus mume Pm006304 N 0.857
Pm014329 Prunus mume Pm014329 I 0.807
PRUPE_ppa005944mg Prunus persica PRUPE_ppa005944mg N 0.852
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.799
28677.m000055 Ricinus communis 28677.m000055 N 0.804
29692.m000540 Ricinus communis 29692.m000540 N 0.913
SapurV1A.0015s0210 Salix purpurea SapurV1A.0015s0210 N 0.886
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N 0.753
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N 0.882
Si039400m.g Setaria italica Si039400m.g N 0.705
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N 0.801
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N 0.801
Sb01g010660 Sorghum bicolor Sb01g010660 N 0.723
TCM_010965 Theobroma cacao TCM_010965 N 0.908
TCM_019165 Theobroma cacao TCM_019165 N 0.772
GAI1 Vitis vinifera VIT_01s0011g05260 N 0.893
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.800
GRMZM2G144744 Zea mays GRMZM2G144744 N 0.733