chr2.LjT30P12.80.nc (Lotus japonicus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 chr2.LjT30P12.80.nc T247416_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.889 0.889
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.LjT30P12.80.nc LOB 34 132

Links

Other LOB family TFs
Other Lotus japonicus TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_25656 Aegilops tauschii F775_25656 I 0.828
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.707
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.859
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.717
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.899
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.859
LOB Arabidopsis lyrata scaffold_802995.1 I 0.889
LBD25 Arabidopsis thaliana AT3G27650 I 0.869
LOB Arabidopsis thaliana AT5G63090 D 0.889
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.859
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.889
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.828
Bo2g144870 Brassica oleracea Bo2g144870 I 0.818
Bo3g104760 Brassica oleracea Bo3g104760 I 0.889
Bo7g085860 Brassica oleracea Bo7g085860 I 0.848
Bo9g008330 Brassica oleracea Bo9g008330 I 0.848
Bo9g017470 Brassica oleracea Bo9g017470 I 0.879
Bra025294 Brassica rapa Bra025294 I 0.848
Bra033019 Brassica rapa Bra033019 I 0.818
Bra035860 Brassica rapa Bra035860 I 0.869
Bra038606 Brassica rapa Bra038606 I 0.889
Bra039072 Brassica rapa Bra039072 I 0.848
PK18922.1 Cannabis sativa PK18922.1 I 0.754
PK21510.1 Cannabis sativa PK21510.1 I 0.838
PK26472.1 Cannabis sativa PK26472.1 I 0.919
PK29334.1 Cannabis sativa PK29334.1 I 0.734
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.889
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.869
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.869
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.879
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.869
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.859
Ca_07463 Cicer arietinum Ca_07463 I 0.869
Ca_08824 Cicer arietinum Ca_08824 I 0.869
Ca_24372 Cicer arietinum Ca_24372 I 0.909
Cla003499 Citrullus lanatus Cla003499 I 0.808
Cla010600 Citrullus lanatus Cla010600 I 0.889
Cla017388 Citrullus lanatus Cla017388 I 0.869
Cla019510 Citrullus lanatus Cla019510 I 0.879
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.899
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.848
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.899
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.848
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.899
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.828
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.879
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.869
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.899
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.899
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.848
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.889
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.859
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.939
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.859
GLYMA01G32340 Glycine max GLYMA01G32340 N 0.742
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.848
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.879
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.929
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.859
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.909
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.805
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.879
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.929
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.929
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.869
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.869
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.889
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.848
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.909
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.889
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.879
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.869
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.753
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.939
MDP0000130659 Malus domestica MDP0000130659 I 0.879
MDP0000254288 Malus domestica MDP0000254288 I 0.879
MDP0000643326 Malus domestica MDP0000643326 I 0.707
MDP0000848210 Malus domestica MDP0000848210 I 0.899
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.909
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.879
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.879
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.838
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.879
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.869
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.919
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.909
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.919
mgf003146m Mimulus guttatus mgf003146m I 0.818
mgf016361m Mimulus guttatus mgf016361m I 0.838
mgf024603m Mimulus guttatus mgf024603m I 0.889
OBART01G04470 Oryza barthii OBART01G04470 I 0.838
OB01G14220 Oryza brachyantha OB01G14220 I 0.848
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.838
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.838
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.848
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.838
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.838
OS01G0169400 Oryza sativa OS01G0169400 I 0.838
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.848
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.848
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.747
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.778
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.778
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.758
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.919
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.869
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.869
Pm015649 Prunus mume Pm015649 I 0.919
Pm024312 Prunus mume Pm024312 I 0.869
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.919
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.869
29917.m001993 Ricinus communis 29917.m001993 I 0.909
30147.m013890 Ricinus communis 30147.m013890 I 0.889
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.869
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.848
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.919
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.778
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.778
Si002632m.g Setaria italica Si002632m.g I 0.848
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.859
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.859
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.707
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.859
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.818
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.707
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.848
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.869
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.879
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.818
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.848
TCM_012190 Theobroma cacao TCM_012190 I 0.879
TCM_016952 Theobroma cacao TCM_016952 I 0.899
AS2 Vitis vinifera VIT_00s0340g00090 I 0.707
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.899
LOB Vitis vinifera VIT_17s0000g09010 I 0.879
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.848