Bra017404 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra017404 T253289_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra017404.1-P MADS box 16 61

Links

Other MADS box family TFs
Other Brassica rapa TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_13266 Aegilops tauschii F775_13266 I 0.761
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.761
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.717
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.870
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.761
AGL65 Arabidopsis thaliana AT1G18750 D 0.717
AGL94 Arabidopsis thaliana AT1G69540 N 0.739
AGL30 Arabidopsis thaliana AT2G03060 I 0.891
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.717
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.804
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.870
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.717
Bo9g072860 Brassica oleracea Bo9g072860 N 0.978
Bo7g080890 Brassica oleracea Bo7g080890 I 0.870
Bo6g109050 Brassica oleracea Bo6g109050 I 0.739
Bra024792 Brassica rapa Bra024792 I 0.870
Bra004393 Brassica rapa Bra004393 I 0.739
PK03147.1 Cannabis sativa PK03147.1 I 0.870
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.761
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.739
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.870
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.739
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.870
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.761
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.783
Ca_16376 Cicer arietinum Ca_16376 I 0.891
Ca_18082 Cicer arietinum Ca_18082 I 0.870
Cla010361 Citrullus lanatus Cla010361 I 0.804
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.870
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.870
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.761
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.826
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.739
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.783
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.804
GLYMA02G12131 Glycine max GLYMA02G12131 N 0.739
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.761
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.787
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.739
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.848
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.848
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.761
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.783
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.848
MDP0000146231 Malus domestica MDP0000146231 I 0.870
MDP0000146415 Malus domestica MDP0000146415 I 0.848
MDP0000147667 Malus domestica MDP0000147667 I 0.848
MDP0000773068 Malus domestica MDP0000773068 I 0.848
MDP0000919323 Malus domestica MDP0000919323 I 0.848
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.804
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.783
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.870
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.717
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.717
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.761
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.761
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.739
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.761
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.891
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.870
Pm006479 Prunus mume Pm006479 I 0.826
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.826
29813.m001508 Ricinus communis 29813.m001508 I 0.826
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.848
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.848
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.739
TCM_011687 Theobroma cacao TCM_011687 I 0.826
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.761
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.761
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.761
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.761