RFX7 (Equus caballus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSECAG00000002379 T318211_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.788 0.962
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.788 0.962
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.788 0.962
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.788 0.962
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.705 0.582
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.705 0.582
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.705 0.582
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.705 0.582
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.705 0.582
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.705 0.582
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.705 0.582
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.705 0.582
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.705 0.582
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.705 0.582
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.705 0.582
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.705 0.582
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.705 0.582
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.705 0.582
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.705 0.582
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000001984 RFX 105 184

Links

Other RFX family TFs
Other Equus caballus TFs

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL013752 Aedes aegypti AAEL013752 I 0.681
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.700
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.788
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.780
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.708
AMAG_10999 Allomyces macrogynus AMAG_10999 I 0.659
AMAG_11601 Allomyces macrogynus AMAG_11601 I 0.659
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.673
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.788
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.787
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.708
AALB008384 Anopheles albimanus AALB008384 I 0.683
AARA004226 Anopheles arabiensis AARA004226 I 0.683
AATE016751 Anopheles atroparvus AATE016751 I 0.683
ACHR008891 Anopheles christyi ACHR008891 I 0.683
ACOM036649 Anopheles coluzzii ACOM036649 I 0.683
ACUA017169 Anopheles culicifacies ACUA017169 I 0.683
ADAC008404 Anopheles darlingi ADAC008404 I 0.683
ADIR010232 Anopheles dirus ADIR010232 I 0.683
AEPI006624 Anopheles epiroticus AEPI006624 I 0.683
AFAF011654 Anopheles farauti AFAF011654 I 0.683
AFUN011072 Anopheles funestus AFUN011072 I 0.683
AGAP013226 Anopheles gambiae AGAP013226 I 0.683
AMEC002251 Anopheles melas AMEC002251 I 0.683
AMEM009524 Anopheles merus AMEM009524 I 0.683
AMIN003942 Anopheles minimus AMIN003942 I 0.683
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.683
ASIS020285 Anopheles sinensis ASIS020285 I 0.683
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.683
GB49419 Apis mellifera GB49419 I 0.694
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.714
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.791
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.707
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.778
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.779
ACEP24602 Atta cephalotes ACEP24602 I 0.694
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.678
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.705
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.788
RFX7 Bos taurus ENSBTAG00000000565 I 0.788
RFX5 Bos taurus ENSBTAG00000017580 I 0.705
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.723
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.780
RFX7 Callithrix jacchus ENSCJAG00000002163 I 0.688
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.705
Aan_R010941 Calypte anna Aan_R010941 I 0.698
Aan_R011989 Calypte anna Aan_R011989 I 0.791
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.681
RFX5 Canis familiaris ENSCAFG00000012661 I 0.705
RFX7 Canis familiaris ENSCAFG00000016029 I 0.788
CapteG131555 Capitella teleta CapteG131555 I 0.685
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.788
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.705
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.667
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.687
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.705
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.788
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.788
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.701
CLEC011984 Cimex lectularius CLEC011984 I 0.677
csin102559 Clonorchis sinensis csin102559 I 0.714
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.699
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.680
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.680
KGM_16732 Danaus plexippus KGM_16732 I 0.685
rfx5 Danio rerio ENSDARG00000063258 I 0.711
rfx7 Danio rerio ENSDARG00000077237 I 0.775
RFX7 Danio rerio ENSDARG00000103691 I 0.778
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.694
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.788
DILT_0001462801 Diphyllobothrium latum DILT_0001462801 I 0.655
ENSDORG00000004908 Dipodomys ordii ENSDORG00000004908 I 0.687
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.705
GF16654 Drosophila ananassae FBgn0093675 I 0.680
GG10435 Drosophila erecta FBgn0102744 I 0.680
GH18082 Drosophila grimshawi FBgn0125550 I 0.680
CG9727 Drosophila melanogaster FBgn0037445 I 0.680
GI24583 Drosophila mojavensis FBgn0147305 I 0.680
GL22063 Drosophila persimilis FBgn0159655 I 0.680
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.680
GM10553 Drosophila sechellia FBgn0165499 I 0.680
GD19544 Drosophila simulans FBgn0191039 I 0.680
GJ22650 Drosophila virilis FBgn0209754 I 0.680
GK13786 Drosophila willistoni FBgn0215794 I 0.680
GE24099 Drosophila yakuba FBgn0241238 I 0.680
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.700
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.700
RFX5 Echinops telfairi ENSETEG00000013503 I 0.705
RFX7 Echinops telfairi ENSETEG00000015037 I 0.776
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.658
RFX5 Equus caballus ENSECAG00000024774 I 0.705
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.692
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.781
D915_00887 Fasciola hepatica D915_00887 I 0.659
RFX5 Felis catus ENSFCAG00000005568 I 0.705
RFX7 Felis catus ENSFCAG00000029408 I 0.782
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.716
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.788
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.764
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.774
RFX5 Gallus gallus ENSGALG00000000836 I 0.708
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.774
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.755
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.716
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.791
GPLIN_000191300 Globodera pallida GPLIN_000191300 I 0.656
RFX7 Gorilla gorilla ENSGGOG00000002118 I 0.688
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.705
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.694
HMEL011744 Heliconius melpomene HMEL011744 I 0.686
RFX5 Homo sapiens ENSG00000143390 D 0.705
RFX7 Homo sapiens ENSG00000181827 D 0.788
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.700
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.709
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.707
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.707
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.704
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.707
ENSSTOG00000027249 Ictidomys tridecemlineatus ENSSTOG00000027249 I 0.689
ISCW001129 Ixodes scapularis ISCW001129 I 0.679
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.788
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.710
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.780
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.696
LotgiG138119 Lottia gigantea LotgiG138119 I 0.697
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.788
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.705
LCUP014592 Lucilia cuprina LCUP014592 I 0.683
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.789
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.705
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.705
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.789
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.693
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.705
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.712
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.788
MCINX003210 Melitaea cinxia MCINX003210 I 0.686
RFX7 Microcebus murinus ENSMICG00000000614 I 0.681
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.788
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.662
MDOA009335 Musca domestica MDOA009335 I 0.684
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.788
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.705
Rfx5 Mus musculus ENSMUSG00000005774 I 0.705
Rfx7 Mus musculus ENSMUSG00000037674 D 0.788
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.700
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.787
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.700
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.786
NV23037 Nasonia vitripennis NV23037 I 0.693
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.704
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.788
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.705
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.687
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.712
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.697
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.698
T265_11740 Opisthorchis viverrini T265_11740 I 0.714
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.710
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.759
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.774
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.788
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.705
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.788
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.708
RFX7 Oryzias latipes ENSORLG00000005342 I 0.774
rfx7 Oryzias latipes ENSORLG00000008583 I 0.758
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.705
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.788
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.788
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.705
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.705
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.788
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.705
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.788
PHUM035280 Pediculus humanus PHUM035280 I 0.687
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.788
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.701
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.761
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.756
ENSPFOG00000003977 Poecilia formosa ENSPFOG00000003977 I 0.671
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.711
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.702
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.781
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.705
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.788
RFX7 Procavia capensis ENSPCAG00000004974 I 0.788
RFX5 Procavia capensis ENSPCAG00000011056 I 0.705
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.786
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.705
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.705
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.788
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.788
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.705
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.659
A_01977 Schistosoma haematobium A_01977 I 0.703
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.696
Smp_040350 Schistosoma mansoni Smp_040350 I 0.703
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.696
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.700
SINV24627 Solenopsis invicta SINV24627 I 0.694
RFX5 Sorex araneus ENSSARG00000000750 I 0.705
RFX7 Sorex araneus ENSSARG00000010801 I 0.789
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.721
RFX7 Sus scrofa ENSSSCG00000004603 I 0.688
RFX5 Sus scrofa ENSSSCG00000006625 I 0.705
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.695
TsM_000553100 Taenia solium TsM_000553100 I 0.700
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.791
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.712
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.769
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.758
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.788
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.665
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.683
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.712
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.747
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.769
TC008959 Tribolium castaneum TC008959 I 0.689
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.705
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.684
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.705
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.785
Tal_R011248 Tyto alba Tal_R011248 I 0.691
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.788
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.701
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.787
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.710
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.756
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.774
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.711
L798_03377 Zootermopsis nevadensis L798_03377 I 0.695