GSMUA_AchrUn_randomG05290_001 (Musa acuminata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GSMUA_AchrUn_randomG05290_001 T330382_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.451 0.536
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_AchrUn_randomP05290_001 Sox 106 175

Links

Other Sox family TFs
Other Musa acuminata TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_27510 Aegilops tauschii F775_27510 I 0.429
F775_30706 Aegilops tauschii F775_30706 I 0.476
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.472
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.424
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.415
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.587
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.453
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.462
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.419
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.440
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.417
HMGB2 Arabidopsis thaliana AT1G20693 I 0.462
HMGB3 Arabidopsis thaliana AT1G20696 I 0.419
HMGB4 Arabidopsis thaliana AT2G17560 I 0.450
HMGB1 Arabidopsis thaliana AT3G51880 I 0.453
HMGB7 Arabidopsis thaliana AT5G23420 N 0.417
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.481
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.440
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.453
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.419
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.462
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.435
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.444
Bo2g160920 Brassica oleracea Bo2g160920 I 0.486
Bo7g014280 Brassica oleracea Bo7g014280 I 0.438
Bo7g061420 Brassica oleracea Bo7g061420 I 0.419
Bo7g101270 Brassica oleracea Bo7g101270 I 0.453
Bo8g070350 Brassica oleracea Bo8g070350 I 0.419
Bo8g081200 Brassica oleracea Bo8g081200 I 0.453
Bo9g014140 Brassica oleracea Bo9g014140 I 0.519
Bra002073 Brassica rapa Bra002073 I 0.458
Bra025838 Brassica rapa Bra025838 I 0.419
Bra026498 Brassica rapa Bra026498 I 0.519
Bra029371 Brassica rapa Bra029371 I 0.486
Bra037266 Brassica rapa Bra037266 I 0.441
PK03866.1 Cannabis sativa PK03866.1 I 0.542
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.508
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.453
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.440
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.419
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.462
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.508
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.462
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.419
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.440
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.453
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.424
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.427
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.440
Ca_05351 Cicer arietinum Ca_05351 I 0.536
Ca_09896 Cicer arietinum Ca_09896 I 0.441
Ca_10725 Cicer arietinum Ca_10725 I 0.433
Ca_19340 Cicer arietinum Ca_19340 I 0.430
Cla009222 Citrullus lanatus Cla009222 I 0.522
Cla018386 Citrullus lanatus Cla018386 I 0.470
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.492
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.492
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.459
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.522
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.436
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.515
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.419
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.460
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.453
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.441
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.436
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.470
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.530
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.530
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.423
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.415
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.552
HHAL000319-PA Halyomorpha halys HHAL000319-PA N 0.444
MLOC_57633 Hordeum vulgare MLOC_57633 I 0.472
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.417
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.429
LPERR02G22240 Leersia perrieri LPERR02G22240 N 0.449
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.428
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.423
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.423
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.437
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.425
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.435
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.503
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.458
MDP0000205665 Malus domestica MDP0000205665 I 0.544
MDP0000607529 Malus domestica MDP0000607529 I 0.430
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.545
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.436
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.495
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.458
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.433
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.458
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.443
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.426
mgf006113m Mimulus guttatus mgf006113m I 0.438
mgf008076m Mimulus guttatus mgf008076m I 0.438
mgf009124m Mimulus guttatus mgf009124m N 0.448
mgf009330m Mimulus guttatus mgf009330m I 0.418
mgf014518m Mimulus guttatus mgf014518m I 0.425
mgf016363m Mimulus guttatus mgf016363m I 0.430
mgf016608m Mimulus guttatus mgf016608m I 0.438
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.436
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.436
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.454
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.480
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.487
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.436
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.436
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.424
OBART02G27340 Oryza barthii OBART02G27340 N 0.449
OBART06G28090 Oryza barthii OBART06G28090 I 0.428
OBART08G00070 Oryza barthii OBART08G00070 I 0.483
OB02G34710 Oryza brachyantha OB02G34710 N 0.449
OB06G35870 Oryza brachyantha OB06G35870 I 0.435
OB08G10120 Oryza brachyantha OB08G10120 N 0.465
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.428
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.449
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.428
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.483
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.449
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.418
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.483
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.483
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.428
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.483
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.449
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.428
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.449
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.428
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.483
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.449
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.428
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.483
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.449
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.428
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.483
OS02G0670400 Oryza sativa OS02G0670400 N 0.449
OS06G0728000 Oryza sativa OS06G0728000 I 0.428
OS08G0101100 Oryza sativa OS08G0101100 I 0.483
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.428
Pavir.Fb00026 Panicum virgatum Pavir.Fb00026 N 0.453
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.428
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.428
Pavir.J38684 Panicum virgatum Pavir.J38684 N 0.444
Pavir.J40489 Panicum virgatum Pavir.J40489 N 0.444
GSPATT00003330001 Paramecium tetraurelia GSPATT00003330001 N 0.419
GSPATT00005000001 Paramecium tetraurelia GSPATT00005000001 N 0.435
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.502
gw1.6.301.1 Phycomyces blakesleeanus gw1.6.301.1 N 0.429
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.474
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.464
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.464
HMG-1 Pisum sativum Q41026_PEA D 0.451
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.425
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.508
Pm002934 Prunus mume Pm002934 I 0.446
Pm006054 Prunus mume Pm006054 I 0.563
Pm026798 Prunus mume Pm026798 I 0.419
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.446
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.419
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.419
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.563
29600.m000548 Ricinus communis 29600.m000548 I 0.424
30131.m007272 Ricinus communis 30131.m007272 I 0.470
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.419
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.430
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.546
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.420
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.420
Si007288m.g Setaria italica Si007288m.g I 0.428
Si014434m.g Setaria italica Si014434m.g N 0.463
Si018635m.g Setaria italica Si018635m.g N 0.444
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.430
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.436
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.418
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.472
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.431
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.435
TCM_007659 Theobroma cacao TCM_007659 I 0.559
TCM_042534 Theobroma cacao TCM_042534 I 0.434
Traes_6AL_9EC9874F1 Triticum aestivum Traes_6AL_9EC9874F1 I 0.476
Traes_6BL_017F7FCF8 Triticum aestivum Traes_6BL_017F7FCF8 I 0.476
Traes_6DL_E5B5F44FC Triticum aestivum Traes_6DL_E5B5F44FC I 0.476
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.420
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.420
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.420
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.429
TRIUR3_34670 Triticum urartu TRIUR3_34670 I 0.476
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.420
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.436
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.547
GRMZM2G013821 Zea mays GRMZM2G013821 N 0.444
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.454
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.435