Phatr3_J50240 (Phaeodactylum tricornutum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Phatr3_J50240 T331931_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Phatr3_J50240.p1 Sox 28 55
Phatr3_J50240.p1 Sox 70 126

Links

Other Sox family TFs
Other Phaeodactylum tricornutum TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
UCREL1_5722 Eutypa lata UCREL1_5722 N 0.433
fgenesh2_pg.9_#_75 Fragilariopsis cylindrus fgenesh2_pg.9_#_75 N 0.580
fgenesh2_pg.9_#_353 Fragilariopsis cylindrus fgenesh2_pg.9_#_353 N 0.512
fgenesh2_pg.4_#_1036 Fragilariopsis cylindrus fgenesh2_pg.4_#_1036 N 0.483
estExt_Genewise1Plus.C_70298 Fragilariopsis cylindrus estExt_Genewise1Plus.C_70298 N 0.448
estExt_fgenesh2_kg.C_130080 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_130080 N 0.496
GPLIN_000170600 Globodera pallida GPLIN_000170600 N 0.439
PAS_chr1-1_0442 Komagataella pastoris PAS_chr1-1_0442 N 0.459
MAM_05902 Metarhizium album MAM_05902 N 0.442
NCLIV_023590 Neospora caninum NCLIV_023590 N 0.428
Phatr3_J50336 Phaeodactylum tricornutum Phatr3_J50336 N 0.452
Phatr3_J33840 Phaeodactylum tricornutum Phatr3_J33840 N 0.608
Phatr3_J38097 Phaeodactylum tricornutum Phatr3_J38097 N 0.500
Phatr3_J39045 Phaeodactylum tricornutum Phatr3_J39045 N 0.467
Phatr3_J47350 Phaeodactylum tricornutum Phatr3_J47350 N 0.480
Phatr3_J49937 Phaeodactylum tricornutum Phatr3_J49937 N 0.453
Phatr3_J49938 Phaeodactylum tricornutum Phatr3_J49938 N 0.483
XP_002490100.1 Pichia pastoris XP_002490100.1 N 0.459
GLOINDRAFT_9339 Rhizophagus irregularis GLOINDRAFT_9339 N 0.415
S40285_05706 Stachybotrys chlorohalonata S40285_05706 N 0.479
Thaps5285 Thalassiosira pseudonana Thaps5285 N 0.536
Thapsdraft1840 Thalassiosira pseudonana Thapsdraft1840 N 0.440
Thapsdraft651 Thalassiosira pseudonana Thapsdraft651 N 0.449
Thaps4076 Thalassiosira pseudonana Thaps4076 N 0.458
Thaps4075 Thalassiosira pseudonana Thaps4075 N 0.458
Thaps25909 Thalassiosira pseudonana Thaps25909 N 0.499
Thaps24954 Thalassiosira pseudonana Thaps24954 N 0.437
Thaps23446 Thalassiosira pseudonana Thaps23446 N 0.422
Thaps22889 Thalassiosira pseudonana Thaps22889 N 0.460
Thaps12024 Thalassiosira pseudonana Thaps12024 N 0.494
Thaps11168 Thalassiosira pseudonana Thaps11168 N 0.479
Thaps10099 Thalassiosira pseudonana Thaps10099 N 0.432