Carubv10018534m.g (Capsella rubella)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Carubv10018534m.g T202363_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10018534m GRAS 241 595

Links

Other GRAS family TFs
Other Capsella rubella TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.7903s0021 Boechera stricta Bostr.7903s0021 N 0.969
Cagra.2235s0013 Capsella grandiflora Cagra.2235s0013 N 0.961
RGA Arabidopsis thaliana AT2G01570 N 0.933
RGA1 Arabidopsis lyrata fgenesh2_kg.5__65__AT2G01570.1 N 0.930
Thhalv10005482m.g Eutrema salsugineum Thhalv10005482m.g N 0.925
Bo7g078550 Brassica oleracea Bo7g078550 N 0.923
Bra024875 Brassica rapa Bra024875 N 0.911
Cagra.3501s0003 Capsella grandiflora Cagra.3501s0003 N 0.864
GAI Arabidopsis thaliana AT1G14920 N 0.861
Bostr.7128s0107 Boechera stricta Bostr.7128s0107 N 0.855
GAI Arabidopsis lyrata fgenesh2_kg.1__1634__AT1G14920.1 N 0.855
Carubv10008833m.g Capsella rubella Carubv10008833m.g N 0.849
cassava15077.m1 Manihot esculenta cassava15077.m1 N 0.847
Thhalv10007323m.g Eutrema salsugineum Thhalv10007323m.g N 0.846
Bra017443 Brassica rapa Bra017443 N 0.844
29692.m000540 Ricinus communis 29692.m000540 N 0.844
TCM_010965 Theobroma cacao TCM_010965 N 0.832
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N 0.829
cassava14484.m1 Manihot esculenta cassava14484.m1 N 0.827
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N 0.824
Gorai.002G177000 Gossypium raimondii Gorai.002G177000 N 0.821
evm.TU.supercontig_2.240 Carica papaya evm.TU.supercontig_2.240 I 0.821
PK14700.1 Cannabis sativa PK14700.1 N 0.815
Cucsa.280310 Cucumis sativus Cucsa.280310 N 0.815
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N 0.812
SapurV1A.0015s0210 Salix purpurea SapurV1A.0015s0210 N 0.810
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N 0.807
GAI1 Vitis vinifera VIT_01s0011g05260 N 0.804
Cla003996 Citrullus lanatus Cla003996 N 0.801
GLYMA05G27190 Glycine max GLYMA05G27190 N 0.798
Bo9g070200 Brassica oleracea Bo9g070200 N 0.797
MDP0000237978 Malus domestica MDP0000237978 N 0.787
Pm006304 Prunus mume Pm006304 N 0.787
PRUPE_ppa005944mg Prunus persica PRUPE_ppa005944mg N 0.784
Ca_05046 Cicer arietinum Ca_05046 N 0.778
GLYMA08G10140 Glycine max GLYMA08G10140 N 0.776
orange1.1g043131m.g Citrus sinensis orange1.1g043131m.g N 0.773
GRMZM2G144744 Zea mays GRMZM2G144744 N 0.767
Ciclev10017466m.g Citrus clementina Ciclev10017466m.g N 0.758
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I 0.756
TCM_019165 Theobroma cacao TCM_019165 N 0.749
Pm014329 Prunus mume Pm014329 I 0.747
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N 0.747
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N 0.744
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.737
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.736
MDP0000669451 Malus domestica MDP0000669451 I 0.735
mgf008289m Mimulus guttatus mgf008289m N 0.733
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.732
28677.m000055 Ricinus communis 28677.m000055 N 0.730
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.728
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N 0.726
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N 0.725
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N 0.725
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N 0.722
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.722
Cla020062 Citrullus lanatus Cla020062 N 0.722
Cucsa.006260 Cucumis sativus Cucsa.006260 N 0.722
Aquca_091_00032 Aquilegia coerulea Aquca_091_00032 N 0.722
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.716
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I 0.714
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.709
MTR_3g065980 Medicago truncatula MTR_3g065980 N 0.708
Ca_13295 Cicer arietinum Ca_13295 I 0.707
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.705
Lus10017626.g Linum usitatissimum Lus10017626.g N 0.705
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.705
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.704