GLYMA13G02170 (Glycine max)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 GLYMA13G02170 T254196_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL67
M10907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT1G77950_01 		0.729 0.729
Q40882_PETHY
M11003_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP11_01 		0.729 0.729
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.708 0.708
Q43616_PETHY
M11004_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP7_01 		0.708 0.708
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.708 0.708
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.708 0.708
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA13G02170.1 MADS box 10 57

Links

Other MADS box family TFs
Other Glycine max TFs

251 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA14G34160 Glycine max GLYMA14G34160 I 0.979
29908.m005982 Ricinus communis 29908.m005982 I 0.917
PRUPE_ppa007816mg Prunus persica PRUPE_ppa007816mg I 0.917
orange1.1g039560m.g Citrus sinensis orange1.1g039560m.g I 0.917
Gorai.007G242000 Gossypium raimondii Gorai.007G242000 I 0.917
TCM_034970 Theobroma cacao TCM_034970 I 0.917
Pm019181 Prunus mume Pm019181 I 0.917
Ciclev10003964m.g Citrus clementina Ciclev10003964m.g I 0.917
MDP0000243965 Malus domestica MDP0000243965 I 0.917
gene31290-v1.0-hybrid Fragaria vesca gene31290-v1.0-hybrid I 0.917
TCM_001182 Theobroma cacao TCM_001182 I 0.917
Gorai.005G093000 Gossypium raimondii Gorai.005G093000 I 0.917
GSMUA_Achr9G13010_001 Musa acuminata GSMUA_Achr9G13010_001 I 0.917
SapurV1A.0293s0130 Salix purpurea SapurV1A.0293s0130 I 0.896
Lus10016810.g Linum usitatissimum Lus10016810.g I 0.896
SapurV1A.0010s0340 Salix purpurea SapurV1A.0010s0340 I 0.896
POPTR_0002s09290 Populus trichocarpa POPTR_0002s09290 I 0.896
cassava22012.m1 Manihot esculenta cassava22012.m1 I 0.896
GSMUA_Achr3G04450_001 Musa acuminata GSMUA_Achr3G04450_001 I 0.896
Lus10022506.g Linum usitatissimum Lus10022506.g I 0.896
cassava32041.m1 Manihot esculenta cassava32041.m1 I 0.896
POPTR_0007s05980 Populus trichocarpa POPTR_0007s05980 I 0.896
Aquca_014_00554 Aquilegia coerulea Aquca_014_00554 I 0.896
OPUNC08G17110 Oryza punctata OPUNC08G17110 I 0.875
LPERR06G07270 Leersia perrieri LPERR06G07270 I 0.875
GRMZM2G334225 Zea mays GRMZM2G334225 I 0.875
Ca_24539 Cicer arietinum Ca_24539 I 0.875
evm.TU.supercontig_21.133 Carica papaya evm.TU.supercontig_21.133 I 0.875
MTR_4g084740 Medicago truncatula MTR_4g084740 I 0.875
Pavir.Db01574 Panicum virgatum Pavir.Db01574 I 0.875
OLONG_004474 Oryza longistaminata OLONG_004474 I 0.875
Sb10g007810 Sorghum bicolor Sb10g007810 I 0.875
Bo7g060150 Brassica oleracea Bo7g060150 I 0.875
Si008439m.g Setaria italica Si008439m.g I 0.875
AGL104 Arabidopsis lyrata Al_scaffold_0001_2320 I 0.875
AMTR_s00010p00214260 Amborella trichopoda AMTR_s00010p00214260 I 0.875
AGL104 Arabidopsis thaliana AT1G22130 I 0.875
GRMZM2G152415 Zea mays GRMZM2G152415 I 0.875
Bo8g071330 Brassica oleracea Bo8g071330 I 0.875
VIT_07s0031g01140 Vitis vinifera VIT_07s0031g01140 I 0.875
Bra012308 Brassica rapa Bra012308 I 0.875
OB08G26170 Oryza brachyantha OB08G26170 I 0.875
Bra016386 Brassica rapa Bra016386 I 0.875
Cla014721 Citrullus lanatus Cla014721 I 0.875
ONIVA06G09080 Oryza nivara ONIVA06G09080 I 0.854
OGLUM06G08350 Oryza glumaepatula OGLUM06G08350 I 0.854
Bostr.12659s0064 Boechera stricta Bostr.12659s0064 I 0.854
TCM_034757 Theobroma cacao TCM_034757 I 0.854
Cagra.0096s0037 Capsella grandiflora Cagra.0096s0037 I 0.854
Carubv10021590m.g Capsella rubella Carubv10021590m.g I 0.854
Carubv10010907m.g Capsella rubella Carubv10010907m.g I 0.854
Cagra.1707s0007 Capsella grandiflora Cagra.1707s0007 I 0.854
OS08G0494100 Oryza sativa OS08G0494100 I 0.854
OS06G0223300 Oryza sativa OS06G0223300 I 0.854
ORGLA08G0167200 Oryza glaberrima ORGLA08G0167200 I 0.854
ORGLA06G0074200 Oryza glaberrima ORGLA06G0074200 I 0.854
ORUFI06G08110 Oryza rufipogon ORUFI06G08110 I 0.854
ORUFI08G21330 Oryza rufipogon ORUFI08G21330 I 0.854
Bostr.20129s0232 Boechera stricta Bostr.20129s0232 I 0.854
OPUNC06G07570 Oryza punctata OPUNC06G07570 I 0.854
OGLUM08G20110 Oryza glumaepatula OGLUM08G20110 I 0.854
Bo6g121640 Brassica oleracea Bo6g121640 I 0.854
BGIOSGA026745 Oryza indica BGIOSGA026745 I 0.854
Bra015643 Brassica rapa Bra015643 I 0.854
LPERR08G16000 Leersia perrieri LPERR08G16000 I 0.854
AGL66 Arabidopsis lyrata fgenesh2_kg.2__2091__AT1G77980.1 I 0.854
BGIOSGA003731 Oryza indica BGIOSGA003731 I 0.854
Thhalv10019686m.g Eutrema salsugineum Thhalv10019686m.g I 0.854
OBART08G19110 Oryza barthii OBART08G19110 I 0.854
AGL66 Arabidopsis thaliana AT1G77980 I 0.854
OBART06G07860 Oryza barthii OBART06G07860 I 0.854
OB06G17440 Oryza brachyantha OB06G17440 I 0.854
Si013985m.g Setaria italica Si013985m.g I 0.833
Solyc04g078300.2 Solanum lycopersicum Solyc04g078300.2 I 0.833
orange1.1g046530m.g Citrus sinensis orange1.1g046530m.g I 0.833
Pavir.Fb01739 Panicum virgatum Pavir.Fb01739 I 0.833
Pavir.J32837 Panicum virgatum Pavir.J32837 I 0.833
VIT_18s0001g09540 Vitis vinifera VIT_18s0001g09540 I 0.833
Lus10018714.g Linum usitatissimum Lus10018714.g I 0.833
ONIVA08G21050 Oryza nivara ONIVA08G21050 I 0.833
Gorai.009G216900 Gossypium raimondii Gorai.009G216900 I 0.833
Ciclev10001730m.g Citrus clementina Ciclev10001730m.g I 0.833
OMERI06G09450 Oryza meridionalis OMERI06G09450 I 0.833
30170.m013776 Ricinus communis 30170.m013776 I 0.833
Gorai.005G100600 Gossypium raimondii Gorai.005G100600 I 0.833
cassava25616.m1 Manihot esculenta cassava25616.m1 I 0.833
OMERI08G15140 Oryza meridionalis OMERI08G15140 I 0.812
Ca_01572 Cicer arietinum Ca_01572 I 0.812
estExt_fgenesh1_kg.C_550007 Physcomitrella patens estExt_fgenesh1_kg.C_550007 I 0.812
estExt_fgenesh1_pm.C_80015 Physcomitrella patens estExt_fgenesh1_pm.C_80015 I 0.812
F775_03584 Aegilops tauschii F775_03584 I 0.812
mgf017317m Mimulus guttatus mgf017317m I 0.812
GLYMA04G04641 Glycine max GLYMA04G04641 I 0.812
TRIUR3_20588 Triticum urartu TRIUR3_20588 I 0.812
BRADI3G39177 Brachypodium distachyon BRADI3G39177 I 0.812
Traes_4DS_A28BC582A Triticum aestivum Traes_4DS_A28BC582A I 0.812
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.793
PRUPE_ppa020874mg Prunus persica PRUPE_ppa020874mg I 0.792
estExt_fgenesh1_pg.C_1180093 Physcomitrella patens estExt_fgenesh1_pg.C_1180093 I 0.792
e_gw1.55.5.1 Physcomitrella patens e_gw1.55.5.1 I 0.792
MTR_3g102570 Medicago truncatula MTR_3g102570 I 0.792
Pm005355 Prunus mume Pm005355 I 0.792
Lus10024823.g Linum usitatissimum Lus10024823.g I 0.792
estExt_gwp_gw1.C_900087 Physcomitrella patens estExt_gwp_gw1.C_900087 I 0.792
MDP0000152821 Malus domestica MDP0000152821 I 0.792
TCM_015049 Theobroma cacao TCM_015049 I 0.771
Solyc03g019710.2 Solanum lycopersicum Solyc03g019710.2 I 0.771
estExt_gwp_gw1.C_1630046 Physcomitrella patens estExt_gwp_gw1.C_1630046 I 0.771
Q40172_SOLLC Solanum lycopersicum Q40172_SOLLC I 0.771
PRUPE_ppa023054mg Prunus persica PRUPE_ppa023054mg I 0.771
fgenesh1_pg.scaffold_163000049 Physcomitrella patens fgenesh1_pg.scaffold_163000049 I 0.771
mgf019100m Mimulus guttatus mgf019100m N 0.750
Thhalv10019795m.g Eutrema salsugineum Thhalv10019795m.g I 0.750
SELMODRAFT_449720 Selaginella moellendorffii SELMODRAFT_449720 N 0.750
SELMODRAFT_449721 Selaginella moellendorffii SELMODRAFT_449721 N 0.750
e_gw1.273.6.1 Physcomitrella patens e_gw1.273.6.1 I 0.750
PGSC0003DMG401015205 Solanum tuberosum PGSC0003DMG401015205 I 0.750
Gorai.007G043400 Gossypium raimondii Gorai.007G043400 I 0.750
estExt_Genewise1.C_80073 Physcomitrella patens estExt_Genewise1.C_80073 I 0.750
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.743
OLONG_023633 Oryza longistaminata OLONG_023633 I 0.737
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.733
Q40882_PETHY Petunia x hybrida Q40882_PETHY D 0.729
Cla006326 Citrullus lanatus Cla006326 I 0.729
estExt_gwp_gw1.C_340302 Physcomitrella patens estExt_gwp_gw1.C_340302 I 0.729
30147.m014133 Ricinus communis 30147.m014133 I 0.729
Cucsa.392160 Cucumis sativus Cucsa.392160 I 0.729
mgf006616m Mimulus guttatus mgf006616m I 0.729
Cucsa.251140 Cucumis sativus Cucsa.251140 I 0.729
VIT_16s0022g02400 Vitis vinifera VIT_16s0022g02400 I 0.729
Cla002664 Citrullus lanatus Cla002664 I 0.729
evm.TU.supercontig_4.204 Carica papaya evm.TU.supercontig_4.204 I 0.729
OMERI10G13430 Oryza meridionalis OMERI10G13430 I 0.729
OLONG_017665 Oryza longistaminata OLONG_017665 I 0.729
ONIVA10G18680 Oryza nivara ONIVA10G18680 I 0.729
ORGLA10G0119200 Oryza glaberrima ORGLA10G0119200 I 0.729
Eucgr.K00208 Eucalyptus grandis Eucgr.K00208 I 0.729
OGLUM10G16960 Oryza glumaepatula OGLUM10G16960 I 0.729
OBART10G16960 Oryza barthii OBART10G16960 I 0.729
LPERR10G12950 Leersia perrieri LPERR10G12950 I 0.729
MDP0000268317 Malus domestica MDP0000268317 I 0.729
MDP0000060753 Malus domestica MDP0000060753 I 0.729
OB10G24040 Oryza brachyantha OB10G24040 I 0.729
ORUFI10G17990 Oryza rufipogon ORUFI10G17990 I 0.729
gene13354-v1.0-hybrid Fragaria vesca gene13354-v1.0-hybrid I 0.729
fgenesh2_kg.2__2089__AT1G77950.1 Arabidopsis lyrata fgenesh2_kg.2__2089__AT1G77950.1 I 0.729
MADS56 Oryza sativa OS10G0536100 I 0.729
fgenesh2_kg.2__2429__AT1G77950.2 Arabidopsis lyrata fgenesh2_kg.2__2429__AT1G77950.2 I 0.729
MADS56 Oryza indica BGIOSGA033356 I 0.729
Eucgr.K00204 Eucalyptus grandis Eucgr.K00204 I 0.729
Eucgr.K00203 Eucalyptus grandis Eucgr.K00203 I 0.729
AGL67 Arabidopsis thaliana AT1G77950 D 0.729
MDP0000179718 Malus domestica MDP0000179718 I 0.727
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I 0.727
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.722
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.720
Pavir.Ga00461 Panicum virgatum Pavir.Ga00461 I 0.708
mgf008635m Mimulus guttatus mgf008635m I 0.708
Pavir.Gb00526 Panicum virgatum Pavir.Gb00526 I 0.708
PK09312.1 Cannabis sativa PK09312.1 I 0.708
Pavir.Ea03607 Panicum virgatum Pavir.Ea03607 I 0.708
O82698_MALDO Malus domestica O82698_MALDO D 0.708
Pavir.Ab00058 Panicum virgatum Pavir.Ab00058 I 0.708
SapurV1A.0024s0570 Salix purpurea SapurV1A.0024s0570 I 0.708
mgf005317m Mimulus guttatus mgf005317m I 0.708
orange1.1g027691m.g Citrus sinensis orange1.1g027691m.g I 0.708
Lus10002763.g Linum usitatissimum Lus10002763.g I 0.708
Eucgr.K00194 Eucalyptus grandis Eucgr.K00194 I 0.708
Eucgr.K00200 Eucalyptus grandis Eucgr.K00200 I 0.708
Eucgr.K00191 Eucalyptus grandis Eucgr.K00191 I 0.708
Ciclev10022568m.g Citrus clementina Ciclev10022568m.g I 0.708
Carubv10021761m.g Capsella rubella Carubv10021761m.g I 0.708
Ciclev10016427m.g Citrus clementina Ciclev10016427m.g I 0.708
evm.TU.supercontig_13.95 Carica papaya evm.TU.supercontig_13.95 I 0.708
Aquca_013_00471 Aquilegia coerulea Aquca_013_00471 I 0.708
mgf011060m Mimulus guttatus mgf011060m I 0.708
mgf009713m Mimulus guttatus mgf009713m I 0.708
Cagra.0096s0039 Capsella grandiflora Cagra.0096s0039 I 0.708
Gorai.007G093800 Gossypium raimondii Gorai.007G093800 I 0.708
Gorai.001G172200 Gossypium raimondii Gorai.001G172200 I 0.708
MDP0000144597 Malus domestica MDP0000144597 I 0.708
Solyc03g006830.2 Solanum lycopersicum Solyc03g006830.2 I 0.708
OBART01G39740 Oryza barthii OBART01G39740 I 0.708
OBART03G01800 Oryza barthii OBART03G01800 I 0.708
OGLUM01G43970 Oryza glumaepatula OGLUM01G43970 I 0.708
OB03G11760 Oryza brachyantha OB03G11760 I 0.708
OB01G48510 Oryza brachyantha OB01G48510 I 0.708
MTR_7g075850 Medicago truncatula MTR_7g075850 I 0.708
MTR_8g033220 Medicago truncatula MTR_8g033220 I 0.708
OGLUM03G01750 Oryza glumaepatula OGLUM03G01750 I 0.708
OLONG_003033 Oryza longistaminata OLONG_003033 I 0.708
ONIVA03G01420 Oryza nivara ONIVA03G01420 I 0.708
Cucsa.115490 Cucumis sativus Cucsa.115490 I 0.708
ONIVA01G44610 Oryza nivara ONIVA01G44610 I 0.708
OMERI03G01730 Oryza meridionalis OMERI03G01730 I 0.708
OLONG_010918 Oryza longistaminata OLONG_010918 I 0.708
OMERI01G36640 Oryza meridionalis OMERI01G36640 I 0.708
LPERR01G34270 Leersia perrieri LPERR01G34270 I 0.708
GSMUA_Achr8G28100_001 Musa acuminata GSMUA_Achr8G28100_001 I 0.708
GRMZM2G005155 Zea mays GRMZM2G005155 I 0.708
GRMZM2G018589 Zea mays GRMZM2G018589 I 0.708
GRMZM2G135018 Zea mays GRMZM2G135018 I 0.708
F775_25533 Aegilops tauschii F775_25533 I 0.708
Bo4g111230 Brassica oleracea Bo4g111230 I 0.708
AMTR_s00071p00193200 Amborella trichopoda AMTR_s00071p00193200 I 0.708
BGIOSGA004940 Oryza indica BGIOSGA004940 I 0.708
GRMZM2G137387 Zea mays GRMZM2G137387 I 0.708
GSMUA_Achr10G10990_001 Musa acuminata GSMUA_Achr10G10990_001 I 0.708
GSMUA_Achr2G06250_001 Musa acuminata GSMUA_Achr2G06250_001 I 0.708
GSMUA_Achr3G15930_001 Musa acuminata GSMUA_Achr3G15930_001 I 0.708
GSMUA_Achr2G04350_001 Musa acuminata GSMUA_Achr2G04350_001 I 0.708
GSMUA_Achr2G04340_001 Musa acuminata GSMUA_Achr2G04340_001 I 0.708
GSMUA_Achr10G21480_001 Musa acuminata GSMUA_Achr10G21480_001 I 0.708
GSMUA_Achr1G00750_001 Musa acuminata GSMUA_Achr1G00750_001 I 0.708
OPUNC03G01630 Oryza punctata OPUNC03G01630 I 0.708
OPUNC01G38480 Oryza punctata OPUNC01G38480 I 0.708
Traes_7DS_05F0F0B64 Triticum aestivum Traes_7DS_05F0F0B64 I 0.708
VIT_18s0001g04810 Vitis vinifera VIT_18s0001g04810 I 0.708
STK Vitis vinifera VIT_18s0041g01880 I 0.708
Solyc11g028020.1 Solanum lycopersicum Solyc11g028020.1 I 0.708
Solyc06g035570.1 Solanum lycopersicum Solyc06g035570.1 I 0.708
Solyc05g012020.2 Solanum lycopersicum Solyc05g012020.2 D 0.708
Solyc05g051830.2 Solanum lycopersicum Solyc05g051830.2 N 0.708
Ca_06280 Cicer arietinum Ca_06280 I 0.708
Cla002388 Citrullus lanatus Cla002388 I 0.708
cassava28636.m1 Manihot esculenta cassava28636.m1 I 0.708
cassava38700.m1 Manihot esculenta cassava38700.m1 I 0.708
cassava40221.m1 Manihot esculenta cassava40221.m1 I 0.708
Q9ATE7_PETHY Petunia x hybrida Q9ATE7_PETHY D 0.708
Q43616_PETHY Petunia x hybrida Q43616_PETHY D 0.708
Pm004218 Prunus mume Pm004218 I 0.708
Pm024524 Prunus mume Pm024524 I 0.708
OPUNC08G19670 Oryza punctata OPUNC08G19670 I 0.708
Sb06g028420 Sorghum bicolor Sb06g028420 I 0.708
ORUFI03G01510 Oryza rufipogon ORUFI03G01510 I 0.708
MADS21 Oryza sativa OS01G0886200 I 0.708
ORUFI01G43090 Oryza rufipogon ORUFI01G43090 I 0.708
ORGLA03G0015400 Oryza glaberrima ORGLA03G0015400 I 0.708
OPUNC10G15300 Oryza punctata OPUNC10G15300 I 0.708
ORGLA01G0336500 Oryza glaberrima ORGLA01G0336500 I 0.708
MADS50 Oryza sativa OS03G0122600 D 0.708
PGSC0003DMG400005176 Solanum tuberosum PGSC0003DMG400005176 I 0.708
PRUPE_ppa011140mg Prunus persica PRUPE_ppa011140mg I 0.708
PRUPE_ppa019906mg Prunus persica PRUPE_ppa019906mg I 0.708
POPTR_0002s15310 Populus trichocarpa POPTR_0002s15310 I 0.708
POPTR_0012s10190 Populus trichocarpa POPTR_0012s10190 I 0.708
PGSC0003DMG401024252 Solanum tuberosum PGSC0003DMG401024252 I 0.708
PGSC0003DMG400025525 Solanum tuberosum PGSC0003DMG400025525 I 0.708
H311_00382 Anncaliia algerae H311_00382 I 0.704
MTR_5g061740 Medicago truncatula MTR_5g061740 N 0.704
ONIVA04G11980 Oryza nivara ONIVA04G11980 I 0.700