CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10007010m.g
(
Citrus clementina
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Ciclev10007010m.g
T257874_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10007010m
MADS box
16
63
KIENENDRMIAFSKRRSGIYKKASELVTLTGAEVGIVVFSPSAKPFSF
Links
Other
MADS box
family TFs
Other
Citrus clementina
TFs
35 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ciclev10006708m.g
Citrus clementina
Ciclev10006708m.g
N
0.938
Ciclev10007104m.g
Citrus clementina
Ciclev10007104m.g
N
0.917
Ciclev10006503m.g
Citrus clementina
Ciclev10006503m.g
N
0.896
Ciclev10006958m.g
Citrus clementina
Ciclev10006958m.g
N
0.896
29693.m002042
Ricinus communis
29693.m002042
N
0.812
Ciclev10006500m.g
Citrus clementina
Ciclev10006500m.g
N
0.812
Cla009921
Citrullus lanatus
Cla009921
N
0.812
Cucsa.047600
Cucumis sativus
Cucsa.047600
N
0.812
Ciclev10006615m.g
Citrus clementina
Ciclev10006615m.g
N
0.792
29693.m002041
Ricinus communis
29693.m002041
N
0.792
Ciclev10006740m.g
Citrus clementina
Ciclev10006740m.g
N
0.771
PRUPE_ppa024983mg
Prunus persica
PRUPE_ppa024983mg
N
0.771
cassava9826.m1
Manihot esculenta
cassava9826.m1
N
0.771
Ciclev10006957m.g
Citrus clementina
Ciclev10006957m.g
N
0.771
orange1.1g044532m.g
Citrus sinensis
orange1.1g044532m.g
N
0.771
POPTR_0004s13590
Populus trichocarpa
POPTR_0004s13590
N
0.771
POPTR_0001s25850
Populus trichocarpa
POPTR_0001s25850
N
0.771
Ciclev10006803m.g
Citrus clementina
Ciclev10006803m.g
N
0.771
Pm008734
Prunus mume
Pm008734
N
0.771
Ciclev10006530m.g
Citrus clementina
Ciclev10006530m.g
N
0.771
Ciclev10006427m.g
Citrus clementina
Ciclev10006427m.g
N
0.756
cassava9834.m1
Manihot esculenta
cassava9834.m1
N
0.750
cassava39120.m1
Manihot esculenta
cassava39120.m1
N
0.750
Eucgr.E02870
Eucalyptus grandis
Eucgr.E02870
N
0.750
Eucgr.E02872
Eucalyptus grandis
Eucgr.E02872
N
0.729
Eucgr.L01236
Eucalyptus grandis
Eucgr.L01236
N
0.729
orange1.1g040485m.g
Citrus sinensis
orange1.1g040485m.g
N
0.729
MDP0000696333
Malus domestica
MDP0000696333
N
0.729
Eucgr.E02827
Eucalyptus grandis
Eucgr.E02827
N
0.729
Ciclev10006743m.g
Citrus clementina
Ciclev10006743m.g
N
0.729
Ciclev10006439m.g
Citrus clementina
Ciclev10006439m.g
N
0.729
PRUPE_ppa021886mg
Prunus persica
PRUPE_ppa021886mg
N
0.729
Eucgr.E02824
Eucalyptus grandis
Eucgr.E02824
N
0.729
Eucgr.E02829
Eucalyptus grandis
Eucgr.E02829
N
0.729
orange1.1g038327m.g
Citrus sinensis
orange1.1g038327m.g
N
0.722