CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10007104m.g
(
Citrus clementina
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Ciclev10007104m.g
T257877_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10007104m
MADS box
16
63
KIENEDDRMITFSKRRSGIYKKASELVTLTGAEIGIVVFSPSGKPFSF
Links
Other
MADS box
family TFs
Other
Citrus clementina
TFs
56 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ciclev10006958m.g
Citrus clementina
Ciclev10006958m.g
N
0.979
Ciclev10006503m.g
Citrus clementina
Ciclev10006503m.g
N
0.979
Ciclev10006708m.g
Citrus clementina
Ciclev10006708m.g
N
0.938
Ciclev10007010m.g
Citrus clementina
Ciclev10007010m.g
N
0.917
Ciclev10006500m.g
Citrus clementina
Ciclev10006500m.g
N
0.896
Ciclev10006615m.g
Citrus clementina
Ciclev10006615m.g
N
0.875
Ciclev10006803m.g
Citrus clementina
Ciclev10006803m.g
N
0.854
Ciclev10006957m.g
Citrus clementina
Ciclev10006957m.g
N
0.854
POPTR_0001s25850
Populus trichocarpa
POPTR_0001s25850
N
0.854
29693.m002041
Ricinus communis
29693.m002041
N
0.854
orange1.1g044532m.g
Citrus sinensis
orange1.1g044532m.g
N
0.854
Ciclev10006740m.g
Citrus clementina
Ciclev10006740m.g
N
0.854
Cla009921
Citrullus lanatus
Cla009921
N
0.854
Ciclev10006530m.g
Citrus clementina
Ciclev10006530m.g
N
0.854
Cucsa.047600
Cucumis sativus
Cucsa.047600
N
0.854
cassava9826.m1
Manihot esculenta
cassava9826.m1
N
0.833
29693.m002042
Ricinus communis
29693.m002042
N
0.833
Ciclev10006427m.g
Citrus clementina
Ciclev10006427m.g
N
0.822
Ciclev10006439m.g
Citrus clementina
Ciclev10006439m.g
N
0.812
PRUPE_ppa024983mg
Prunus persica
PRUPE_ppa024983mg
N
0.812
Pm008734
Prunus mume
Pm008734
N
0.812
POPTR_0004s13590
Populus trichocarpa
POPTR_0004s13590
N
0.812
cassava39120.m1
Manihot esculenta
cassava39120.m1
N
0.812
orange1.1g040485m.g
Citrus sinensis
orange1.1g040485m.g
N
0.812
orange1.1g038327m.g
Citrus sinensis
orange1.1g038327m.g
N
0.806
cassava9834.m1
Manihot esculenta
cassava9834.m1
N
0.792
Eucgr.E02870
Eucalyptus grandis
Eucgr.E02870
N
0.792
Ciclev10006743m.g
Citrus clementina
Ciclev10006743m.g
N
0.792
Ciclev10006546m.g
Citrus clementina
Ciclev10006546m.g
N
0.775
Ciclev10007015m.g
Citrus clementina
Ciclev10007015m.g
N
0.771
orange1.1g047467m.g
Citrus sinensis
orange1.1g047467m.g
N
0.771
PRUPE_ppa021886mg
Prunus persica
PRUPE_ppa021886mg
N
0.771
Ciclev10006587m.g
Citrus clementina
Ciclev10006587m.g
N
0.767
Eucgr.E02827
Eucalyptus grandis
Eucgr.E02827
N
0.750
Eucgr.E02829
Eucalyptus grandis
Eucgr.E02829
N
0.750
Eucgr.E02872
Eucalyptus grandis
Eucgr.E02872
N
0.750
POPTR_0009s05050
Populus trichocarpa
POPTR_0009s05050
N
0.750
Eucgr.L01236
Eucalyptus grandis
Eucgr.L01236
N
0.750
orange1.1g039494m.g
Citrus sinensis
orange1.1g039494m.g
N
0.750
Eucgr.E02824
Eucalyptus grandis
Eucgr.E02824
N
0.750
Ciclev10006405m.g
Citrus clementina
Ciclev10006405m.g
N
0.750
SapurV1A.2714s0010
Salix purpurea
SapurV1A.2714s0010
N
0.750
cassava46357.m1
Manihot esculenta
cassava46357.m1
N
0.750
SapurV1A.1613s0060
Salix purpurea
SapurV1A.1613s0060
N
0.750
SapurV1A.0619s0200
Salix purpurea
SapurV1A.0619s0200
N
0.750
Ciclev10006588m.g
Citrus clementina
Ciclev10006588m.g
N
0.744
Aquca_041_00050
Aquilegia coerulea
Aquca_041_00050
N
0.729
MDP0000696333
Malus domestica
MDP0000696333
N
0.729
orange1.1g048697m.g
Citrus sinensis
orange1.1g048697m.g
N
0.711
Ciclev10006022m.g
Citrus clementina
Ciclev10006022m.g
N
0.711
Pm030654
Prunus mume
Pm030654
N
0.708
AGL61
Arabidopsis lyrata
Al_scaffold_0004_541
N
0.708
Carubv10024914m.g
Capsella rubella
Carubv10024914m.g
N
0.708
Cagra.1004s0007
Capsella grandiflora
Cagra.1004s0007
N
0.708
Gorai.009G284300
Gossypium raimondii
Gorai.009G284300
N
0.708
AGL61
Arabidopsis thaliana
AT2G24840
N
0.708