cassava9834.m1 (Manihot esculenta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 cassava9834.m1 T257253_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava9834.m1 MADS box 17 64

Links

Other MADS box family TFs
Other Manihot esculenta TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0004s13590 Populus trichocarpa POPTR_0004s13590 N 0.938
29693.m002042 Ricinus communis 29693.m002042 N 0.875
Ciclev10006559m.g Citrus clementina Ciclev10006559m.g N 0.875
Cla009921 Citrullus lanatus Cla009921 N 0.854
29693.m002041 Ricinus communis 29693.m002041 N 0.854
Cucsa.047600 Cucumis sativus Cucsa.047600 N 0.854
POPTR_0001s25850 Populus trichocarpa POPTR_0001s25850 N 0.833
Ciclev10006530m.g Citrus clementina Ciclev10006530m.g N 0.812
orange1.1g044532m.g Citrus sinensis orange1.1g044532m.g N 0.812
SapurV1A.0619s0200 Salix purpurea SapurV1A.0619s0200 N 0.812
SapurV1A.2714s0010 Salix purpurea SapurV1A.2714s0010 N 0.812
SapurV1A.1613s0060 Salix purpurea SapurV1A.1613s0060 N 0.812
PRUPE_ppa021886mg Prunus persica PRUPE_ppa021886mg N 0.792
POPTR_0009s05050 Populus trichocarpa POPTR_0009s05050 N 0.792
Ciclev10006957m.g Citrus clementina Ciclev10006957m.g N 0.792
Eucgr.E02870 Eucalyptus grandis Eucgr.E02870 N 0.792
PRUPE_ppa024983mg Prunus persica PRUPE_ppa024983mg N 0.792
Ciclev10007090m.g Citrus clementina Ciclev10007090m.g N 0.792
Ciclev10007104m.g Citrus clementina Ciclev10007104m.g N 0.792
cassava9826.m1 Manihot esculenta cassava9826.m1 N 0.792
Pm008734 Prunus mume Pm008734 N 0.792
Ciclev10006958m.g Citrus clementina Ciclev10006958m.g N 0.771
Ciclev10006503m.g Citrus clementina Ciclev10006503m.g N 0.771
cassava39120.m1 Manihot esculenta cassava39120.m1 N 0.771
Eucgr.L01236 Eucalyptus grandis Eucgr.L01236 N 0.750
Eucgr.E02872 Eucalyptus grandis Eucgr.E02872 N 0.750
Ciclev10007010m.g Citrus clementina Ciclev10007010m.g N 0.750
Ciclev10006439m.g Citrus clementina Ciclev10006439m.g N 0.750
orange1.1g047467m.g Citrus sinensis orange1.1g047467m.g N 0.729
Ciclev10006708m.g Citrus clementina Ciclev10006708m.g N 0.729
Gorai.009G284300 Gossypium raimondii Gorai.009G284300 N 0.729
Ciclev10007015m.g Citrus clementina Ciclev10007015m.g N 0.729
PRUPE_ppa022905mg Prunus persica PRUPE_ppa022905mg N 0.729
orange1.1g038327m.g Citrus sinensis orange1.1g038327m.g N 0.722
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.711
Ciclev10006405m.g Citrus clementina Ciclev10006405m.g N 0.708
Pm030654 Prunus mume Pm030654 N 0.708
orange1.1g039494m.g Citrus sinensis orange1.1g039494m.g N 0.708
cassava46357.m1 Manihot esculenta cassava46357.m1 N 0.708
Gorai.010G133300 Gossypium raimondii Gorai.010G133300 N 0.708
Eucgr.E02827 Eucalyptus grandis Eucgr.E02827 N 0.708
Eucgr.E02829 Eucalyptus grandis Eucgr.E02829 N 0.708
Gorai.010G132900 Gossypium raimondii Gorai.010G132900 N 0.708
Lus10025872.g Linum usitatissimum Lus10025872.g N 0.708
Eucgr.E02824 Eucalyptus grandis Eucgr.E02824 N 0.708
orange1.1g043113m.g Citrus sinensis orange1.1g043113m.g N 0.706
Gorai.010G132200 Gossypium raimondii Gorai.010G132200 N 0.702