Cagra.0686s0035 (Capsella grandiflora)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cagra.0686s0035 T246709_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.808 0.808
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.808 0.808
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.808 0.808
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0686s0035.1.p LOB 11 110

Links

Other LOB family TFs
Other Capsella grandiflora TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29813.m001508 Ricinus communis 29813.m001508 I
30138.m004061 Ricinus communis 30138.m004061 I
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I
AGL65 Arabidopsis thaliana AT1G18750 D
AGL94 Arabidopsis thaliana AT1G69540 N
AGL30 Arabidopsis thaliana AT2G03060 I
BGIOSGA035654 Oryza indica BGIOSGA035654 N
Bo7g080890 Brassica oleracea Bo7g080890 I
Bo8g068060 Brassica oleracea Bo8g068060 I
Bo8g104060 Brassica oleracea Bo8g104060 I
Bo9g072860 Brassica oleracea Bo9g072860 N
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I
Bra016544 Brassica rapa Bra016544 I
Bra017404 Brassica rapa Bra017404 I
Bra024792 Brassica rapa Bra024792 I
Bra025685 Brassica rapa Bra025685 I
Bra031049 Brassica rapa Bra031049 I
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I
Carubv10009419m.g Capsella rubella Carubv10009419m.g I
Carubv10017440m.g Capsella rubella Carubv10017440m.g I
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I
cassava17346.m1 Manihot esculenta cassava17346.m1 I
cassava19791.m1 Manihot esculenta cassava19791.m1 I
cassava46162.m1 Manihot esculenta cassava46162.m1 I
Ca_16376 Cicer arietinum Ca_16376 I
Ca_18082 Cicer arietinum Ca_18082 I
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I
Cla010361 Citrullus lanatus Cla010361 I
Cla018884 Citrullus lanatus Cla018884 I
Cucsa.112840 Cucumis sativus Cucsa.112840 I
Cucsa.284960 Cucumis sativus Cucsa.284960 I
estExt_Genewise1.C_80073 Physcomitrella patens estExt_Genewise1.C_80073 I
estExt_gwp_gw1.C_340302 Physcomitrella patens estExt_gwp_gw1.C_340302 I
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I
fgenesh1_pg.scaffold_163000049 Physcomitrella patens fgenesh1_pg.scaffold_163000049 I
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I
GLYMA17G10941 Glycine max GLYMA17G10941 I
GLYMA20G04500 Glycine max GLYMA20G04500 N
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I
GRMZM2G441115 Zea mays GRMZM2G441115 I
GSMUA_Achr11G14240_001 Musa acuminata GSMUA_Achr11G14240_001 N
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I
LPERR11G18320 Leersia perrieri LPERR11G18320 N
Lus10019089.g Linum usitatissimum Lus10019089.g I
Lus10026613.g Linum usitatissimum Lus10026613.g I
Lus10030450.g Linum usitatissimum Lus10030450.g I
Lus10034464.g Linum usitatissimum Lus10034464.g I
Lus10036761.g Linum usitatissimum Lus10036761.g N
Lus10037166.g Linum usitatissimum Lus10037166.g N
MDP0000146231 Malus domestica MDP0000146231 I
MDP0000146415 Malus domestica MDP0000146415 I
MDP0000147667 Malus domestica MDP0000147667 I
MDP0000193129 Malus domestica MDP0000193129 I
MDP0000773068 Malus domestica MDP0000773068 I
MDP0000919323 Malus domestica MDP0000919323 I
MLOC_11474 Hordeum vulgare MLOC_11474 I
MTR_4g108720 Medicago truncatula MTR_4g108720 I
MTR_5g041650 Medicago truncatula MTR_5g041650 I
OBART11G21780 Oryza barthii OBART11G21780 N
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N
OLONG_008007 Oryza longistaminata OLONG_008007 N
OMERI11G18020 Oryza meridionalis OMERI11G18020 N
OPUNC11G18320 Oryza punctata OPUNC11G18320 N
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N
OS11G0658700 Oryza sativa OS11G0658700 N
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I
Pavir.J04162 Panicum virgatum Pavir.J04162 I
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I
PK03147.1 Cannabis sativa PK03147.1 I
PK21701.1 Cannabis sativa PK21701.1 I
Pm006479 Prunus mume Pm006479 I
Pm024895 Prunus mume Pm024895 I
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N
AGL33 Populus trichocarpa POPTR_0018s08400 N
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I
Sb05g025970 Sorghum bicolor Sb05g025970 I
Si028357m.g Setaria italica Si028357m.g N
TCM_011687 Theobroma cacao TCM_011687 I
TCM_014051 Theobroma cacao TCM_014051 I
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I
TRIUR3_33223 Triticum urartu TRIUR3_33223 I
AGL65 Vitis vinifera VIT_17s0000g06340 I