OGLUM01G40780 (Oryza glumaepatula)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 OGLUM01G40780 T275651_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.746 0.879
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.724 0.793
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.721 0.779
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.721 0.779
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.701 0.779
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.667 0.736
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OGLUM01G40780.1 Myb 67 113
OGLUM01G40780.1 Myb 119 165
OGLUM01G40780.1 Myb 171 216
OGLUM01G40780.2 Myb 67 105
OGLUM01G40780.2 Myb 112 153
OGLUM01G40780.2 Myb 159 204

Links

Other Myb/SANT family TFs
Other Oryza glumaepatula TFs

176 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29794.m003447 Ricinus communis 29794.m003447 I 0.727
29846.m000184 Ricinus communis 29846.m000184 I 0.806
AMTR_s00012p00208260 Amborella trichopoda AMTR_s00012p00208260 I 0.700
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.684
Aquca_003_00045 Aquilegia coerulea Aquca_003_00045 I 0.776
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.707
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.749
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.721
MYB3R5 Arabidopsis thaliana AT5G02320 D 0.746
MYB3R4 Arabidopsis thaliana AT5G11510 D 0.667
BGIOSGA017917 Oryza indica BGIOSGA017917 I 0.725
Bo1g010040 Brassica oleracea Bo1g010040 I 0.708
Bo1g144510 Brassica oleracea Bo1g144510 I 0.763
Bo3g062020 Brassica oleracea Bo3g062020 N 0.667
Bo3g171130 Brassica oleracea Bo3g171130 I 0.720
Bo5g139340 Brassica oleracea Bo5g139340 I 0.708
Bo7g115810 Brassica oleracea Bo7g115810 I 0.716
Bo9g171130 Brassica oleracea Bo9g171130 I 0.665
Bo9g184660 Brassica oleracea Bo9g184660 I 0.734
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.667
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.747
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I 0.760
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.721
Bra008956 Brassica rapa Bra008956 I 0.665
Bra009597 Brassica rapa Bra009597 I 0.750
Bra011376 Brassica rapa Bra011376 I 0.702
Bra029762 Brassica rapa Bra029762 I 0.713
Bra034067 Brassica rapa Bra034067 I 0.763
Bra034531 Brassica rapa Bra034531 I 0.720
Bra037045 Brassica rapa Bra037045 I 0.686
BRADI2G54640 Brachypodium distachyon BRADI2G54640 I 0.778
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.780
Cagra.2515s0028 Capsella grandiflora Cagra.2515s0028 I 0.732
Cagra.4093s0003 Capsella grandiflora Cagra.4093s0003 I 0.672
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.667
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.667
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.780
Carubv10004063m.g Capsella rubella Carubv10004063m.g I 0.672
Carubv10013377m.g Capsella rubella Carubv10013377m.g I 0.732
cassava12645.valid.m1 Manihot esculenta cassava12645.valid.m1 I 0.784
Ca_01884 Cicer arietinum Ca_01884 I 0.679
Ca_14925 Cicer arietinum Ca_14925 I 0.733
Ca_21127 Cicer arietinum Ca_21127 I 0.668
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.786
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.725
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.798
Cla018173 Citrullus lanatus Cla018173 I 0.780
Cla022565 Citrullus lanatus Cla022565 I 0.712
Cla023357 Citrullus lanatus Cla023357 I 0.717
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.712
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.803
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.717
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.712
Eucgr.K03133 Eucalyptus grandis Eucgr.K03133 I 0.760
evm.TU.supercontig_228.17 Carica papaya evm.TU.supercontig_228.17 I 0.780
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.698
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.702
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.702
F775_05724 Aegilops tauschii F775_05724 I 0.688
F775_12121 Aegilops tauschii F775_12121 N 0.672
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.749
ATMYB3R5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000124 I 0.746
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.667
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.721
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.728
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.764
GLYMA03G19470 Glycine max GLYMA03G19470 I 0.718
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.722
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.722
GLYMA07G15820 Glycine max GLYMA07G15820 I 0.760
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.692
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.702
GLYMA18G39740 Glycine max GLYMA18G39740 I 0.744
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.679
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.786
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.778
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.714
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.697
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.809
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.674
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I 0.783
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.706
GSMUA_Achr6G05030_001 Musa acuminata GSMUA_Achr6G05030_001 I 0.755
GSMUA_Achr7G10520_001 Musa acuminata GSMUA_Achr7G10520_001 I 0.742
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.709
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.840
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.676
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.780
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.780
MDP0000179225 Malus domestica MDP0000179225 I 0.716
MDP0000219581 Malus domestica MDP0000219581 I 0.756
MDP0000295807 Malus domestica MDP0000295807 I 0.724
mgf008601m Mimulus guttatus mgf008601m I 0.673
mgf019610m Mimulus guttatus mgf019610m I 0.720
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.665
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.750
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.717
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.780
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.780
OB01G18340 Oryza brachyantha OB01G18340 I 0.687
OB01G45570 Oryza brachyantha OB01G45570 I 0.790
OB05G26770 Oryza brachyantha OB05G26770 N 0.687
OB12G16480 Oryza brachyantha OB12G16480 I 0.695
OBART01G08110 Oryza barthii OBART01G08110 I 0.695
OBART01G36770 Oryza barthii OBART01G36770 N 0.909
OBART05G19200 Oryza barthii OBART05G19200 I 0.725
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.695
OLONG_011208 Oryza longistaminata OLONG_011208 I 0.842
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.695
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.687
OMERI01G33900 Oryza meridionalis OMERI01G33900 N 0.909
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.695
ONIVA05G20060 Oryza nivara ONIVA05G20060 I 0.725
ONIVA10G04750 Oryza nivara ONIVA10G04750 N 0.909
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.699
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.699
OPUNC01G35700 Oryza punctata OPUNC01G35700 N 0.677
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.740
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.798
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.674
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.909
ORGLA05G0166300 Oryza glaberrima ORGLA05G0166300 I 0.707
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.695
ORUFI01G40130 Oryza rufipogon ORUFI01G40130 N 0.909
ORUFI05G20390 Oryza rufipogon ORUFI05G20390 I 0.725
MYB3R-2 Oryza sativa OS01G0841500 I 0.909
OS05G0459000 Oryza sativa OS05G0459000 I 0.707
OS12G0238000 Oryza sativa OS12G0238000 I 0.695
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.689
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.800
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.689
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.800
Pavir.J07395 Panicum virgatum Pavir.J07395 I 0.666
PDK_20s1314361g001 Phoenix dactylifera PDK_20s1314361g001 N 0.670
PDK_20s1371143g001 Phoenix dactylifera PDK_20s1371143g001 I 0.680
PGSC0003DMG400008908 Solanum tuberosum PGSC0003DMG400008908 I 0.744
PK11664.1 Cannabis sativa PK11664.1 I 0.728
PK12011.1 Cannabis sativa PK12011.1 D 0.724
Pm002704 Prunus mume Pm002704 I 0.806
Pm005124 Prunus mume Pm005124 I 0.690
Pm018007 Prunus mume Pm018007 I 0.669
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.804
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.714
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.714
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.710
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.806
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.701
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.806
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.712
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.684
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.814
Si000842m.g Setaria italica Si000842m.g I 0.800
Si021484m.g Setaria italica Si021484m.g I 0.729
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.718
Solyc09g010820.2 Solanum lycopersicum Solyc09g010820.2 I 0.744
TCM_021936 Theobroma cacao TCM_021936 I 0.786
TCM_047091 Theobroma cacao TCM_047091 I 0.714
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.777
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.787
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.700
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.708
TRAES3BF104600030CFD_g Triticum aestivum TRAES3BF104600030CFD_g I 0.779
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.692
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.733
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.705
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.731
Traes_3AL_386795528 Triticum aestivum Traes_3AL_386795528 I 0.779
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.708
Traes_3DL_6BBC889A1 Triticum aestivum Traes_3DL_6BBC889A1 I 0.779
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.691
TRIUR3_29290 Triticum urartu TRIUR3_29290 I 0.739
TRIUR3_33469 Triticum urartu TRIUR3_33469 N 0.672
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.685
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I 0.772
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.723