Cla017937 (Citrullus lanatus)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Cla017937 T022014_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M01646_2.00 		Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN		 PBM
Weirauch et al.(2014)
pTH8592 		0.713 0.713
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla017937 B3 42 153

Links

Other B3 family TFs
Other Citrullus lanatus TFs

272 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00114p00142630 Amborella trichopoda AMTR_s00114p00142630 I 0.743
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.762
Bo4g197410 Brassica oleracea Bo4g197410 I 0.703
Bra040478 Brassica rapa Bra040478 I 0.713
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.762
GLYMA02G36090 Glycine max GLYMA02G36090 I 0.851
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.733
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.713
GLYMA10G08871 Glycine max GLYMA10G08871 I 0.861
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.723
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.733
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.713
GSMUA_Achr9G02600_001 Musa acuminata GSMUA_Achr9G02600_001 I 0.743
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.743
MLOC_66387 Hordeum vulgare MLOC_66387 I 0.752
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.703
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.743
OB02G35380 Oryza brachyantha OB02G35380 I 0.752
OBART04G22880 Oryza barthii OBART04G22880 I 0.762
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.762
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.701
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.762
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.762
OS04G0581400 Oryza sativa OS04G0581400 I 0.762
PGSC0003DMG400005856 Solanum tuberosum PGSC0003DMG400005856 I 0.713
PGSC0003DMG400005857 Solanum tuberosum PGSC0003DMG400005857 I 0.713
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.733
POPTR_0001s45650 Populus trichocarpa POPTR_0001s45650 I 0.723
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.723
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.723
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.733
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.851
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.723
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.723
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.743
TCM_005014 Theobroma cacao TCM_005014 I 0.743
TCM_015590 Theobroma cacao TCM_015590 I 0.723
Traes_1BL_60A56C455 Triticum aestivum Traes_1BL_60A56C455 I 0.703
Traes_1BL_F14523046 Triticum aestivum Traes_1BL_F14523046 I 0.703
Traes_6AL_44AA5642C Triticum aestivum Traes_6AL_44AA5642C I 0.752
Traes_6DL_359607E93 Triticum aestivum Traes_6DL_359607E93 I 0.752
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.814
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.733
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.733
Ca_01368 Cicer arietinum Ca_01368 I 0.713
Ca_25633 Cicer arietinum Ca_25633 I 0.842
Cla006845 Citrullus lanatus Cla006845 I 0.703
Pm024248 Prunus mume Pm024248 I 0.733
30068.m002615 Ricinus communis 30068.m002615 I 0.713
30076.m004471 Ricinus communis 30076.m004471 I 0.723
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.713
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.733
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.703
Cucsa.193290 Cucumis sativus Cucsa.193290 I 0.703
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.990
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.733
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.822
Cagra.11546s0001 Capsella grandiflora Cagra.11546s0001 I 0.723
Cagra.2117s0038 Capsella grandiflora Cagra.2117s0038 I 0.802
Carubv10001689m.g Capsella rubella Carubv10001689m.g I 0.802
Carubv10010429m.g Capsella rubella Carubv10010429m.g I 0.723
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I 0.842
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.743
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.723
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.723
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.733
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.851
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.733
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.733
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.723
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I 0.851
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.703
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.723
Gorai.002G237900 Gossypium raimondii Gorai.002G237900 I 0.792
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.703
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.713
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.713
Gorai.008G261100 Gossypium raimondii Gorai.008G261100 I 0.723
Lus10034276.g Linum usitatissimum Lus10034276.g I 0.713
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.743
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.723
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I 0.842
Pavir.Ab02711 Panicum virgatum Pavir.Ab02711 I 0.772
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.733
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.723
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.743
Thhalv10015675m.g Eutrema salsugineum Thhalv10015675m.g I 0.802
PK04952.1 Cannabis sativa PK04952.1 I 0.861
PK11025.1 Cannabis sativa PK11025.1 I 0.733
PK21157.1 Cannabis sativa PK21157.1 I 0.713
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.713
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.723
AMTR_s00018p00040300 Amborella trichopoda AMTR_s00018p00040300 N 0.703
ARF31 Arabidopsis thaliana AT2G36080 N 0.822
AT3G11580 Arabidopsis thaliana AT3G11580 N 0.792
AT5G06250 Arabidopsis thaliana AT5G06250 N 0.812
BGIOSGA005835 Oryza indica BGIOSGA005835 N 0.743
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.752
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.723
BGIOSGA034469 Oryza indica BGIOSGA034469 N 0.832
BGIOSGA036599 Oryza indica BGIOSGA036599 N 0.782
Bo01079s020 Brassica oleracea Bo01079s020 N 0.822
Bo3g003800 Brassica oleracea Bo3g003800 N 0.772
Bo3g039420 Brassica oleracea Bo3g039420 N 0.703
Bo3g064320 Brassica oleracea Bo3g064320 N 0.782
Bo4g006900 Brassica oleracea Bo4g006900 N 0.703
Bo4g035110 Brassica oleracea Bo4g035110 N 0.812
Bo5g136360 Brassica oleracea Bo5g136360 N 0.782
Bo9g176470 Brassica oleracea Bo9g176470 N 0.802
Bra001411 Brassica rapa Bra001411 N 0.782
Bra003482 Brassica rapa Bra003482 N 0.703
Bra004501 Brassica rapa Bra004501 N 0.703
Bra005301 Brassica rapa Bra005301 N 0.812
Bra005886 Brassica rapa Bra005886 N 0.772
Bra017262 Brassica rapa Bra017262 N 0.822
Bra034828 Brassica rapa Bra034828 N 0.782
Bra041023 Brassica rapa Bra041023 N 0.752
BRADI1G77150 Brachypodium distachyon BRADI1G77150 N 0.723
BRADI4G25170 Brachypodium distachyon BRADI4G25170 N 0.792
BRADI4G42167 Brachypodium distachyon BRADI4G42167 N 0.772
F775_02500 Aegilops tauschii F775_02500 N 0.782
F775_31255 Aegilops tauschii F775_31255 N 0.713
fgenesh2_kg.6__566__AT5G06250.2 Arabidopsis lyrata fgenesh2_kg.6__566__AT5G06250.2 N 0.812
GLYMA03G35700 Glycine max GLYMA03G35700 N 0.792
GLYMA19G38340 Glycine max GLYMA19G38340 N 0.782
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.752
GRMZM2G024948 Zea mays GRMZM2G024948 N 0.752
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.743
GRMZM2G098443 Zea mays GRMZM2G098443 N 0.733
GRMZM2G102059 Zea mays GRMZM2G102059 N 0.752
GRMZM2G142999 Zea mays GRMZM2G142999 N 0.723
GRMZM2G328742 Zea mays GRMZM2G328742 N 0.733
GRMZM5G805685 Zea mays GRMZM5G805685 N 0.733
GSMUA_Achr3G19210_001 Musa acuminata GSMUA_Achr3G19210_001 N 0.782
GSMUA_Achr5G20340_001 Musa acuminata GSMUA_Achr5G20340_001 N 0.703
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N 0.782
GSMUA_Achr6G35600_001 Musa acuminata GSMUA_Achr6G35600_001 N 0.832
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.743
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.762
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.713
LPERR11G03050 Leersia perrieri LPERR11G03050 N 0.723
LPERR12G03290 Leersia perrieri LPERR12G03290 N 0.772
MLOC_11014 Hordeum vulgare MLOC_11014 N 0.782
MLOC_56530 Hordeum vulgare MLOC_56530 N 0.782
MLOC_74058 Hordeum vulgare MLOC_74058 N 0.713
MTR_1g058350 Medicago truncatula MTR_1g058350 N 0.861
MTR_7g105370 Medicago truncatula MTR_7g105370 N 0.802
OB03G11610 Oryza brachyantha OB03G11610 N 0.752
OB10G24100 Oryza brachyantha OB10G24100 N 0.718
OB11G12920 Oryza brachyantha OB11G12920 N 0.822
OB12G13420 Oryza brachyantha OB12G13420 N 0.842
OBART02G28100 Oryza barthii OBART02G28100 N 0.743
OBART03G01650 Oryza barthii OBART03G01650 N 0.752
OBART10G17010 Oryza barthii OBART10G17010 N 0.723
OBART11G03590 Oryza barthii OBART11G03590 N 0.832
OBART12G03490 Oryza barthii OBART12G03490 N 0.782
OGLUM02G28660 Oryza glumaepatula OGLUM02G28660 N 0.743
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.752
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.723
OGLUM11G03240 Oryza glumaepatula OGLUM11G03240 N 0.832
OGLUM12G04180 Oryza glumaepatula OGLUM12G04180 N 0.782
OLONG_005139 Oryza longistaminata OLONG_005139 N 0.832
OMERI02G27240 Oryza meridionalis OMERI02G27240 N 0.743
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.752
OMERI10G13480 Oryza meridionalis OMERI10G13480 N 0.713
OMERI11G03310 Oryza meridionalis OMERI11G03310 N 0.822
OMERI12G01740 Oryza meridionalis OMERI12G01740 N 0.842
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.752
ONIVA07G22860 Oryza nivara ONIVA07G22860 N 0.832
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.723
ONIVA12G03130 Oryza nivara ONIVA12G03130 N 0.782
ONIVA12G15340 Oryza nivara ONIVA12G15340 N 0.743
OPUNC02G25780 Oryza punctata OPUNC02G25780 N 0.743
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.752
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.723
OPUNC11G03320 Oryza punctata OPUNC11G03320 N 0.812
OPUNC12G03300 Oryza punctata OPUNC12G03300 N 0.822
ORGLA02G0241100 Oryza glaberrima ORGLA02G0241100 N 0.743
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.752
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.723
ORGLA11G0033600 Oryza glaberrima ORGLA11G0033600 N 0.832
ORGLA12G0033700 Oryza glaberrima ORGLA12G0033700 N 0.782
ORUFI02G29620 Oryza rufipogon ORUFI02G29620 N 0.743
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.723
ORUFI11G03500 Oryza rufipogon ORUFI11G03500 N 0.832
ORUFI12G03970 Oryza rufipogon ORUFI12G03970 N 0.782
OS02G0683500 Oryza sativa OS02G0683500 N 0.743
OS03G0120900 Oryza sativa OS03G0120900 N 0.752
OS10G0537100 Oryza sativa OS10G0537100 N 0.723
OS11G0156000 Oryza sativa OS11G0156000 N 0.832
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N 0.842
PGSC0003DMG400028159 Solanum tuberosum PGSC0003DMG400028159 N 0.842
POPTR_0002s18260 Populus trichocarpa POPTR_0002s18260 N 0.723
POPTR_0006s22460 Populus trichocarpa POPTR_0006s22460 N 0.881
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N 0.891
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.703
Sb01g030520 Sorghum bicolor Sb01g030520 N 0.735
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.743
Sb04g031710 Sorghum bicolor Sb04g031710 N 0.752
Sb05g003450 Sorghum bicolor Sb05g003450 N 0.802
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.762
Sb08g003550 Sorghum bicolor Sb08g003550 N 0.762
scaffold_301330.1 Arabidopsis lyrata scaffold_301330.1 N 0.792
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N 0.812
Si010849m.g Setaria italica Si010849m.g N 0.743
Si011823m.g Setaria italica Si011823m.g N 0.762
Si020241m.g Setaria italica Si020241m.g N 0.772
Si027632m.g Setaria italica Si027632m.g N 0.792
Si036864m.g Setaria italica Si036864m.g N 0.743
Si039972m.g Setaria italica Si039972m.g N 0.723
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N 0.851
Solyc10g083210.1 Solanum lycopersicum Solyc10g083210.1 N 0.842
TCM_022729 Theobroma cacao TCM_022729 N 0.842
Traes_1AL_29F610E15 Triticum aestivum Traes_1AL_29F610E15 N 0.703
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.762
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N 0.768
Traes_2DL_2128A95BD Triticum aestivum Traes_2DL_2128A95BD N 0.743
Traes_4AL_4F2E6EF28 Triticum aestivum Traes_4AL_4F2E6EF28 N 0.782
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N 0.743
Traes_4BS_5FECB39FA Triticum aestivum Traes_4BS_5FECB39FA N 0.782
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.762
Traes_4DL_D0F3E9568 Triticum aestivum Traes_4DL_D0F3E9568 N 0.703
Traes_4DS_E6210A614 Triticum aestivum Traes_4DS_E6210A614 N 0.782
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N 0.772
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N 0.772
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N 0.861
Ca_00826 Cicer arietinum Ca_00826 N 0.792
Cla014858 Citrullus lanatus Cla014858 N 0.727
Pm028725 Prunus mume Pm028725 N 0.713
30032.m000462 Ricinus communis 30032.m000462 N 0.871
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N 0.891
cassava3990.m1 Manihot esculenta cassava3990.m1 N 0.832
Cucsa.106780 Cucumis sativus Cucsa.106780 N 0.723
Cucsa.349830 Cucumis sativus Cucsa.349830 N 0.713
mgf018965m Mimulus guttatus mgf018965m N 0.782
mgf019085m Mimulus guttatus mgf019085m N 0.842
mgf023769m Mimulus guttatus mgf023769m N 0.733
Bostr.13129s0349 Boechera stricta Bostr.13129s0349 N 0.792
Bostr.19424s1090 Boechera stricta Bostr.19424s1090 N 0.792
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N 0.822
Bostr.25993s0080 Boechera stricta Bostr.25993s0080 N 0.703
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N 0.822
Cagra.1655s0012 Capsella grandiflora Cagra.1655s0012 N 0.792
Carubv10014376m.g Capsella rubella Carubv10014376m.g N 0.792
Carubv10023925m.g Capsella rubella Carubv10023925m.g N 0.822
Eucgr.A02625 Eucalyptus grandis Eucgr.A02625 N 0.772
Gorai.004G128200 Gossypium raimondii Gorai.004G128200 N 0.710
Gorai.006G152400 Gossypium raimondii Gorai.006G152400 N 0.842
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N 0.871
Lus10004226.g Linum usitatissimum Lus10004226.g N 0.762
Lus10021326.g Linum usitatissimum Lus10021326.g N 0.842
MDP0000138163 Malus domestica MDP0000138163 N 0.723
MDP0000229742 Malus domestica MDP0000229742 N 0.812
Pavir.Aa00929 Panicum virgatum Pavir.Aa00929 N 0.752
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N 0.802
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N 0.812
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.762
Pavir.Ha01761 Panicum virgatum Pavir.Ha01761 N 0.792
Pavir.Hb01814 Panicum virgatum Pavir.Hb01814 N 0.782
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.733
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.733
Pavir.J06582 Panicum virgatum Pavir.J06582 N 0.723
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.726
Pavir.J35382 Panicum virgatum Pavir.J35382 N 0.723
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.762
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N 0.871
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N 0.871
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N 0.871
Thhalv10001555m.g Eutrema salsugineum Thhalv10001555m.g N 0.703
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N 0.822
Thhalv10021305m.g Eutrema salsugineum Thhalv10021305m.g N 0.802
LjSGA_011266.1 Lotus japonicus LjSGA_011266.1 N 0.772